@RoanKanninga RoanKanninga released this Mar 26, 2018 · 212 commits to master since this release

Assets 2

updated

  • docs
  • changed prm/cluster for diagnostics
  • decreased resources used in some protocols
  • removed unused workflows (gonl/hmf)
  • removed crashing the pipeline on the genderCheck, now instead it will drop an email and the gender that is calculated will be the "truth" while continuining the pipeline
  • added coverage check, when more than 10% of the targets are below 20x coverage, the sample will be rejected (writing to ${sampleNameID}.rejected )
  • added check if bedfile exists

bugfixes

  • CopyToResultsDir: copying rejectedSamples => misplaced quote
  • removed FIFO pipe in prepareFastQ step since this sometimes occurs in an error