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QTL mapping pipeline

Patrick Deelen edited this page Jan 22, 2019 · 4 revisions

This software allows for eQTL mapping using linear models and direct meta-analysis of such data through weighted Z-score analysis. It also has options to detect mixups, do normalization using PCA and to detect Allele Specific Expression (ASE)

The latest version of the pipeline can be downloaded here: https://molgenis50.gcc.rug.nl/jenkins/job/systemsgenetics/lastStableBuild/nl.systemsgenetics$eqtl-mapping-pipeline/

Make sure to download the .tar.gz or .zip files. The .jar file does not contain the dependencies and will not run.

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