#LD stats calculated from ms-like output

Requires libsequence. This program is really just an example of processing simulation data using the library.

To compile:

c++ -std=c++11 -O2 -o msld msld.cc -lsequence

Usage:

ms 10 1000 -t 10 -r 10 1000 | ./msld | gzip > msldout.gz

The output consists of:

1. Number of haplotypes
2. Haplotype heterozygosity
3. Hudson and Kaplan's Rm
4. Wall's B, Wall, J. (1999) Genetical Research 74, pp 65-79
5. Wall's Q, Wall, J. (1999) Genetical Research 74, pp 65-79
6. Hudson's C