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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 236 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 237 repositories
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 236 CC-BY-4.0 53 403 (2 issues need help) 47 Updated Nov 13, 2024
  • monarch-documentation Public

    Technical documentation for all Monarch applications, packages, services and related projects.

    monarch-initiative/monarch-documentation’s past year of commit activity
    Python 6 GPL-3.0 0 19 1 Updated Nov 13, 2024
  • monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 3 BSD-3-Clause 0 14 0 Updated Nov 13, 2024
  • monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 13, 2024
  • curategpt Public

    LLM-driven curation assist tool

    monarch-initiative/curategpt’s past year of commit activity
    Jupyter Notebook 68 BSD-3-Clause 11 23 5 Updated Nov 12, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 29 2 Updated Nov 12, 2024
  • phenotype2phenopacket Public

    Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

    monarch-initiative/phenotype2phenopacket’s past year of commit activity
    Python 2 1 0 0 Updated Nov 12, 2024
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 18 BSD-3-Clause 6 176 (3 issues need help) 8 Updated Nov 12, 2024
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 3 MIT 1 2 0 Updated Nov 12, 2024
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Jupyter Notebook 5 BSD-3-Clause 0 6 2 Updated Nov 12, 2024

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