From 2f8f6301886358fc3b88a30d8ec973d03dc9f6a1 Mon Sep 17 00:00:00 2001 From: Daniel Danis Date: Mon, 26 Feb 2024 15:30:12 -0500 Subject: [PATCH 1/2] Add data release `2402` --- docs/downloads.rst | 19 +++++++++++++------ 1 file changed, 13 insertions(+), 6 deletions(-) diff --git a/docs/downloads.rst b/docs/downloads.rst index 2d3538e1..3892f6d5 100644 --- a/docs/downloads.rst +++ b/docs/downloads.rst @@ -6,12 +6,19 @@ Downloads SvAnna database files are available for download from the following locations: -========= ============== ============================================================ ============================================= - Version Genome build URL Size -========= ============== ============================================================ ============================================= - 2204 hg38/GRCh38 https://storage.googleapis.com/svanna/2204_hg38.svanna.zip ~627 MB for download, ~2.3 GB unpacked - 2304 hg38/GRCh38 https://storage.googleapis.com/svanna/2304_hg38.svanna.zip ~674 MB for download, ~2.6 GB unpacked -========= ============== ============================================================ ============================================= +========= ================ ============== ============================================================ ============================================= + Version Compatibility Genome build URL Size +========= ================ ============== ============================================================ ============================================= + 2204 [1.0.0, 1.0.3) hg38/GRCh38 https://storage.googleapis.com/svanna/2204_hg38.svanna.zip ~627 MB for download, ~2.3 GB unpacked + 2304 [1.0.3, 1.1.0) hg38/GRCh38 https://storage.googleapis.com/svanna/2304_hg38.svanna.zip ~674 MB for download, ~2.6 GB unpacked + 2402 [1.1.0, latest) hg38/GRCh38 https://storage.googleapis.com/svanna/2402_hg38.svanna.zip ~648 MB for download, ~2.1 GB unpacked +========= ================ ============== ============================================================ ============================================= + +.. note:: + + The *Compatibility* column indicates the SvAnna application version that is compatible + with given database files *Version*. The bracket `[` is inclusive while `)` is exclusive. + For instance version `2304` works with SvAnna versions `1.0.3` and `1.0.4` but *not* with `1.1.0`. Use ``curl`` or ``wget`` utilities to download the files from command line:: From 21d34b9369160bcdde2349f8ec71fcb40a98f1a0 Mon Sep 17 00:00:00 2001 From: Daniel Danis Date: Mon, 26 Feb 2024 15:32:39 -0500 Subject: [PATCH 2/2] Bump version to `1.1.0-SNAPSHOT` to indicate upcoming release. --- docs/conf.py | 4 ++-- pom.xml | 2 +- svanna-benchmark/pom.xml | 2 +- svanna-cli/pom.xml | 2 +- .../src/main/java/org/monarchinitiative/svanna/cli/Main.java | 2 +- svanna-configuration/pom.xml | 2 +- svanna-core/pom.xml | 2 +- svanna-db/pom.xml | 2 +- svanna-ingest/pom.xml | 2 +- svanna-io/pom.xml | 2 +- svanna-model/pom.xml | 2 +- svanna-test/pom.xml | 2 +- 12 files changed, 13 insertions(+), 13 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 4c8fcfd5..7dd47dbd 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -54,9 +54,9 @@ # built documents. # # The short X.Y version. -version = u'1.0' +version = u'1.1' # The full version, including alpha/beta/rc tags. -release = u'1.0.4' +release = u'1.1.0-SNAPSHOT' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/pom.xml b/pom.xml index 5ac99d43..1e3aefe7 100644 --- a/pom.xml +++ b/pom.xml @@ -16,7 +16,7 @@ svanna-benchmark org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT SvAnna diff --git a/svanna-benchmark/pom.xml b/svanna-benchmark/pom.xml index 9dccfabd..a4cbcb67 100644 --- a/svanna-benchmark/pom.xml +++ b/svanna-benchmark/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-cli/pom.xml b/svanna-cli/pom.xml index d6f85294..9e180ec4 100644 --- a/svanna-cli/pom.xml +++ b/svanna-cli/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 svanna-cli diff --git a/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java b/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java index ed7c7427..16451413 100644 --- a/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java +++ b/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java @@ -17,7 +17,7 @@ footer = Main.FOOTER) public class Main implements Callable { - public static final String VERSION = "svanna-cli v1.0.5-SNAPSHOT"; + public static final String VERSION = "svanna-cli v1.1.0-SNAPSHOT"; public static final int WIDTH = 120; diff --git a/svanna-configuration/pom.xml b/svanna-configuration/pom.xml index a7cc1862..b5be80df 100644 --- a/svanna-configuration/pom.xml +++ b/svanna-configuration/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-core/pom.xml b/svanna-core/pom.xml index 861bd491..0b6144da 100644 --- a/svanna-core/pom.xml +++ b/svanna-core/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-db/pom.xml b/svanna-db/pom.xml index d2dc9b68..1a5ba939 100644 --- a/svanna-db/pom.xml +++ b/svanna-db/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-ingest/pom.xml b/svanna-ingest/pom.xml index 5b39d0c5..e2700ff6 100644 --- a/svanna-ingest/pom.xml +++ b/svanna-ingest/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 svanna-ingest diff --git a/svanna-io/pom.xml b/svanna-io/pom.xml index 4d6ff4f1..9d28c553 100644 --- a/svanna-io/pom.xml +++ b/svanna-io/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-model/pom.xml b/svanna-model/pom.xml index 72d6aed1..02f5ca63 100644 --- a/svanna-model/pom.xml +++ b/svanna-model/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0 diff --git a/svanna-test/pom.xml b/svanna-test/pom.xml index 8c11fca1..94b054bf 100644 --- a/svanna-test/pom.xml +++ b/svanna-test/pom.xml @@ -3,7 +3,7 @@ SvAnna org.monarchinitiative.svanna - 1.0.5-SNAPSHOT + 1.1.0-SNAPSHOT 4.0.0