Skip to content

This issue was moved to a discussion.

You can continue the conversation there. Go to discussion →

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New renal classification #3282

Closed
nicolevasilevsky opened this issue Jul 14, 2021 · 0 comments
Closed

New renal classification #3282

nicolevasilevsky opened this issue Jul 14, 2021 · 0 comments
Assignees
Labels
effort-XL Ticket may take more than 2 hours complete kidney reclassification Super-issue this issue is resolved through multiple sub-issues.

Comments

@nicolevasilevsky
Copy link
Member

Per the call today with renal experts, we decided we should reclassify the kidney disease terms in Mondo per the Brenner and Rector's The Kidney.

@sabrinatoro could you please do the following:

  1. see if you can get an ebook of this book at the CU library (I haven't used the library yet myself!)
  2. review the top level classifications of kidney diseases per the table of contents (like we did for Harrison's). Map the classes to existing Mondo terms (I suggest doing this in a spreadsheet)
  3. Review/skim the chapters and note which diseases are classified under each top level class. Map existing classes to Mondo IDs.
  4. before we make any changes in Mondo, we should review this with the kidney experts - we should set up a call with them
  5. The kidney experts may have proposed name changes. We should include Ada on the follow up call to discuss this too.
  6. Once agreed upon, we should implement this new hierarchy in Mondo.

cc @pnrobinson @cmungall @mellybelly

@nicolevasilevsky nicolevasilevsky added the effort-XL Ticket may take more than 2 hours complete label Jul 14, 2021
@sabrinatoro sabrinatoro added this to to do in Sabrina's tickets via automation Jul 14, 2021
@sabrinatoro sabrinatoro moved this from to do to High level in Sabrina's tickets Jul 28, 2021
@sabrinatoro sabrinatoro added the Super-issue this issue is resolved through multiple sub-issues. label Jul 28, 2021
@monarch-initiative monarch-initiative locked and limited conversation to collaborators Oct 21, 2021
Sabrina's tickets automation moved this from High level to Done Oct 21, 2021

This issue was moved to a discussion.

You can continue the conversation there. Go to discussion →

Labels
effort-XL Ticket may take more than 2 hours complete kidney reclassification Super-issue this issue is resolved through multiple sub-issues.
Projects
Development

No branches or pull requests

2 participants