/owlsim-v3

Permalink
Switch branches/tags
Nothing to show
Commits on May 10, 2017
  1. @kshefchek

    test add of human g2p

    kshefchek committed May 10, 2017
    aad70b1
Commits on Apr 21, 2017
  1. @jnguyenx

    added ENV for JAVA_OPTS

    jnguyenx committed Apr 21, 2017
    53dc5fe
Commits on Apr 18, 2017
  1. @jnguyenx

    set JAVA_OPTS at start time

    jnguyenx committed Apr 18, 2017
    8514791
  2. @jnguyenx

    increase docker image ram

    jnguyenx committed Apr 18, 2017
    ca0de00
Commits on Apr 13, 2017
  1. @cmungall

    Merge pull request #82 from monarch-initiative/58-docker-biolink-update 

    58 docker biolink update
    cmungall committed on GitHub Apr 13, 2017
    5f033e0
Commits on Apr 7, 2017
  1. @jnguyenx

    [#58] get data from biolink

    jnguyenx committed Apr 7, 2017
    2f228dd
  2. @jnguyenx

    [#58] get data from biolink

    jnguyenx committed Apr 7, 2017
    a04dc24
Commits on Apr 6, 2017
  1. @jnguyenx

    Merge pull request #79 from monarch-initiative/78-label-tsv 

    [#78] allow labels to be loaded as tsvs
    jnguyenx committed on GitHub Apr 6, 2017
    13770bf
Commits on Mar 31, 2017
  1. @jnguyenx

    [#78] allow labels to be loaded as tsvs

    jnguyenx committed Mar 31, 2017
    dbda7e0
  2. @jnguyenx

    [#72] removing some leftovers

    jnguyenx committed Mar 31, 2017
    c9e11cc
Commits on Mar 29, 2017
  1. @jnguyenx

    [WIP] added scripts to extract owlsim data from biolink

    jnguyenx committed Mar 29, 2017
    e62f8fd
Commits on Mar 25, 2017
  1. @jnguyenx

    Merge pull request #73 from monarch-initiative/72-ontomatch-single-en… 

    …tity

[#72] added service for single entity
    jnguyenx committed on GitHub Mar 25, 2017
    c4afa28
Commits on Mar 24, 2017
  1. @cmungall

    Merge pull request #76 from monarch-initiative/issue-75 

    Implemented prefix filter,
    cmungall committed on GitHub Mar 24, 2017
    1c21472
Commits on Mar 22, 2017
  1. @cmungall

    Implemented prefix filter, #75

    cmungall committed Mar 22, 2017
    37d5a4f
Commits on Mar 21, 2017
  1. @jnguyenx

    Merge branch 'master' into 72-ontomatch-single-entity

    jnguyenx committed Mar 21, 2017
    9765f34
  2. @jnguyenx

    [#72] provide a resolveIri method in the KB

    jnguyenx committed Mar 21, 2017
    6b5fc29
Commits on Mar 20, 2017
  1. @julesjacobsen

    Merge pull request #71 from julesjacobsen/master 

    Adding ability to load individuals from in-memory data as well as off-disk.
    julesjacobsen committed on GitHub Mar 20, 2017
    933184c
Commits on Mar 17, 2017
  1. @julesjacobsen

    Issue #57 changed uses of 'data' to 'individualAssociations' in conte… 

    …xt of the Ontology/OntologySourceData/OwlKnowledgebase in order to be more specific.
    julesjacobsen committed Mar 17, 2017
    75bf89f
Commits on Mar 16, 2017
  1. @jnguyenx

    [#72] added service for single entity

    jnguyenx committed Mar 16, 2017
    8b0a01a
Commits on Mar 15, 2017
  1. @julesjacobsen

    Issue #57 Added methods to enable adding individuals to the Ontology … 

    …via the OwlKnowledgeBase and the OntologyDataSource.
    julesjacobsen committed Mar 15, 2017
    ed63056
  2. @julesjacobsen

    Issue #57 Added static owlLoader() method to BMKnowledgebase to make … 

    …API more self-explanatory.
    julesjacobsen committed Mar 15, 2017
    bdee79f
  3. @julesjacobsen

    Added log info and made getOWLNamedIndividual private.

    julesjacobsen committed Mar 15, 2017
    a0f75f6
Commits on Mar 14, 2017
  1. @julesjacobsen

    Tidied-up Entity and Attribute classes - made immutable value objects… 

    …, added toString.
    julesjacobsen committed Mar 14, 2017
    d2ecc80
Commits on Mar 13, 2017
  1. @jnguyenx

    Merge pull request #70 from julesjacobsen/57-loader_refactor 

    57 loader refactor
    jnguyenx committed on GitHub Mar 13, 2017
    84ce6cb
  2. @julesjacobsen

    Issue #57 - Changed OwlKnowledgeBase from abstract to final class.

    julesjacobsen committed Mar 13, 2017
    d9746b0
  3. @julesjacobsen

    Issue #57 - Fixed server startup issue. Cleaned-up KnowledgeBaseModule.

    julesjacobsen committed Mar 13, 2017
    bd6ea08
  4. @julesjacobsen

    Issue #57 - Added new OwlKnowledgeBase class as a main entry point fo… 

    …r creating a BMKnowledgeBaseOWLAPIImpl - @deprecated OWLLoader.

Added new supporting classes Ontology and OntologyDataSource, OntologyLoadException to help the OwlKnowledgeBase do its thing.
OWLLoader is only partially removed from the tests at present.
Removed overly verbose logging from FilterEngine.
Added commented-out clean-up of KnowledgeBaseModule - server still fails to start with ot without this.
    julesjacobsen committed Mar 13, 2017
    b3c3422
  5. @julesjacobsen

    Added back missing code from bungled merge.

    julesjacobsen committed Mar 13, 2017
    1a34b04
  6. @julesjacobsen

    Changed Optional from Guava to Java.util version.

    julesjacobsen committed Mar 13, 2017
    2b14614
  7. @julesjacobsen

    Merge branch 'master' of https://github.com/monarch-initiative/owlsim-v3 

     into 57-loader_refactor

# Conflicts:
#	owlsim-core/src/main/java/org/monarchinitiative/owlsim/kb/impl/BMKnowledgeBaseOWLAPIImpl.java
    julesjacobsen committed Mar 13, 2017
    28c993c
Commits on Mar 10, 2017
  1. @julesjacobsen

    Updated pom to use Guava 21 as this has support for Java 8 streams.

    julesjacobsen committed Mar 10, 2017
    b25e8a3
  2. @jnguyenx

    Merge pull request #67 from monarch-initiative/58-docker 

    [#58] Added Dockerfile
    jnguyenx committed on GitHub Mar 10, 2017
    5b01dc5
  3. @jnguyenx

    [#58] added species

    jnguyenx committed Mar 10, 2017
    4a2210a
  4. @jnguyenx

    Merge branch 'master' into 58-docker

    jnguyenx committed Mar 10, 2017
    9a9db37
Commits on Mar 9, 2017
  1. @jnguyenx

    [#62] we still need the the inject indicator for guice. We can the ma… 

    …tcher package through java reflection and let the injector construct the objects.
    jnguyenx committed Mar 9, 2017
    56a4aa2