/owlsim-v3

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Commits on Apr 13, 2017
  1. @cmungall

    Merge pull request #82 from monarch-initiative/58-docker-biolink-update 

    58 docker biolink update
    cmungall committed on GitHub Apr 13, 2017
    5f033e0
Commits on Mar 24, 2017
  1. @cmungall

    Merge pull request #76 from monarch-initiative/issue-75 

    Implemented prefix filter,
    cmungall committed on GitHub Mar 24, 2017
    1c21472
Commits on Mar 22, 2017
  1. @cmungall

    Implemented prefix filter, #75

    cmungall committed Mar 22, 2017
    37d5a4f
Commits on Mar 7, 2017
  1. @cmungall

    Merge branch 'frequency-awareness'

    cmungall committed Mar 7, 2017
    6d2d4dd
  2. @cmungall

    typos

    cmungall committed Mar 7, 2017
    d436fdf
  3. @cmungall

    Merge pull request #60 from monarch-initiative/frequency-awareness 

    WIP: first pass at frequency-awareness
    cmungall committed on GitHub Mar 7, 2017
    0511c20
Commits on Mar 2, 2017
  1. @cmungall

    reducing logging

    cmungall committed Mar 2, 2017
    1ac7744
  2. @cmungall

    reducing logging

    cmungall committed Mar 2, 2017
    2c57dc7
  3. @cmungall

    fixing typo in property name

    cmungall committed Mar 2, 2017
    b9c84c6
  4. @cmungall

    first pass at frequency-awareness, issue #56

    cmungall committed Mar 2, 2017
    58e533b
Commits on Feb 15, 2017
  1. @cmungall

    tests

    cmungall committed Feb 15, 2017
    b4b832f
  2. @cmungall

    Merge pull request #52 from monarch-initiative/44-smartapi 

    [#44] almost working generated json. Blocked by a swagger-core bug
    cmungall committed on GitHub Feb 15, 2017
    46a7f92
  3. @cmungall

    adding missing

    cmungall committed Feb 15, 2017
    87ac462
Commits on Feb 13, 2017
  1. @cmungall

    docs for NB3state

    cmungall committed Feb 13, 2017
    ccb16c8
Commits on Feb 11, 2017
  1. @cmungall

    documentation and formatting

    cmungall committed Feb 11, 2017
    432f485
Commits on Feb 10, 2017
  1. @cmungall

    documentation and formatting fixes

    cmungall committed Feb 10, 2017
    794ad20
Commits on Feb 7, 2017
  1. @cmungall

    Merge pull request #48 from monarch-initiative/44-smartapi 

    [#44] smartapi reported errors
    cmungall committed on GitHub Feb 7, 2017
    e3045b7
  2. @cmungall

    Merge pull request #49 from monarch-initiative/fix_typo_methodname 

    change method-name converIndexSetToBitmap to convertIndexSetToBitmap
    cmungall committed on GitHub Feb 7, 2017
    2fd1b1f
Commits on Jan 13, 2017
  1. @cmungall

    if IRI cannot be shorted to CURIE, then return unmodified IRI

    cmungall committed Jan 13, 2017
    de98aab
Commits on Jan 12, 2017
  1. @cmungall

    Merge pull request #41 from monarch-initiative/ontology-matching 

    matching between ontology classes (not instances)
    cmungall committed on GitHub Jan 12, 2017
    4f71b70
  2. @cmungall

    Merge pull request #42 from monarch-initiative/enrichment 

    Adding enrichment service
    cmungall committed on GitHub Jan 12, 2017
    ccb9ea3
  3. @cmungall

    Adding enrichment service

    cmungall committed Jan 12, 2017
    de9684e
  4. @cmungall

    matching between ontology classes (not instances) 

    Fixes #40
    cmungall committed Jan 12, 2017
    59213b3
Commits on Dec 20, 2016
  1. @cmungall

    Merge pull request #37 from monarch-initiative/24-curie 

    24 curie
    cmungall committed on GitHub Dec 20, 2016
    339830d
Commits on Dec 3, 2016
  1. @cmungall

    Merge pull request #36 from monarch-initiative/33-jackson 

    [#33] configure Jackson to ignore empty beans
    cmungall committed on GitHub Dec 3, 2016
    82c9da5
Commits on Dec 2, 2016
  1. @cmungall

    switched scicrunch to owlsim

    cmungall committed Dec 2, 2016
    e859040
  2. @cmungall

    Added parameter to allow comparison of two profiles, fixes #32

    cmungall committed Dec 2, 2016
    9de241d
  3. @cmungall

    Added convenience method for comparing two query profiles, for #32 

    Call like this:

  Match pairMatch = profileMatcher.compareProfilePair(qp, tp);

To implement this, we extend the notion of the target item set
to include anonymous individuals. The target profile is treated as
an anonymous individual
    cmungall committed Dec 2, 2016
    599928b
Commits on Sep 13, 2016
  1. @cmungall

    wheesht

    cmungall committed Sep 13, 2016
    a4a9c23
Commits on Sep 12, 2016
  1. @cmungall

    1.7

    cmungall committed Sep 12, 2016
    0a73a3e
  2. @cmungall

    Adding enrichment to core and services

    cmungall committed Sep 12, 2016
    0b1eae2
  3. @cmungall

    upping OWLAPI version

    cmungall committed Sep 12, 2016
    802079a
Commits on Sep 6, 2016
  1. @cmungall

    less chatty travis tests

    cmungall committed Sep 6, 2016
    a2be62e
  2. @cmungall

    organized imports - do not import experimental class not yet in GH

    cmungall committed Sep 6, 2016
    d0f976c
  3. @cmungall

    Added TypeFilters 

    improved tests, and included compressed data for perf tests
switched to java8
switched to owlapi-v4
bumped up version of various frameworks
added additional params to services
    cmungall committed Sep 6, 2016
    eaa2673