diff --git a/docker/mongodb-agent/setup-agent-files.sh b/docker/mongodb-agent/setup-agent-files.sh
index 6a1b8a007..df9371a54 100755
--- a/docker/mongodb-agent/setup-agent-files.sh
+++ b/docker/mongodb-agent/setup-agent-files.sh
@@ -8,8 +8,8 @@ SCRIPTS_DIR="/opt/scripts"
 # readiness always returns failure
 setup_dummy_probes() {
   echo "Setting up dummy probe scripts..."
-  cp /usr/local/bin/dummy-probe.sh "$SCRIPTS_DIR/probe.sh"
-  cp /usr/local/bin/dummy-readinessprobe "$SCRIPTS_DIR/readinessprobe"
+  cp --remove-destination /usr/local/bin/dummy-probe.sh "$SCRIPTS_DIR/probe.sh"
+  cp --remove-destination /usr/local/bin/dummy-readinessprobe "$SCRIPTS_DIR/readinessprobe"
   echo "Dummy probe scripts ready"
 }
 
diff --git a/scripts/evergreen/e2e/dump_diagnostic_information.sh b/scripts/evergreen/e2e/dump_diagnostic_information.sh
index f4ea7b986..5b889621a 100755
--- a/scripts/evergreen/e2e/dump_diagnostic_information.sh
+++ b/scripts/evergreen/e2e/dump_diagnostic_information.sh
@@ -126,29 +126,26 @@ dump_pod_logs() {
         kubectl cp "${namespace}/${pod}:/var/log/mongodb-mms-automation/automation-agent.log" "logs/${prefix}${pod}-agent.log" &> /dev/null
         kubectl cp "${namespace}/${pod}:/var/log/mongodb-mms-automation/monitoring-agent-verbose.log" "logs/${prefix}${pod}-monitoring-agent-verbose.log" &> /dev/null
         kubectl cp "${namespace}/${pod}:/var/log/mongodb-mms-automation/monitoring-agent.log" "logs/${prefix}${pod}-monitoring-agent.log" &> /dev/null
-        kubectl logs -n "${namespace}" "${pod}" -c "mongodb-agent-monitoring" > "logs/${prefix}${pod}-monitoring-agent-stdout.log" || true
-        kubectl logs -n "${namespace}" "${pod}" -c "mongod" > "logs/${prefix}${pod}-mongod-container.log" || true
-        kubectl logs -n "${namespace}" "${pod}" -c "mongodb-agent" > "logs/${prefix}${pod}-mongodb-agent-container.log" || true
         kubectl cp "${namespace}/${pod}:/var/log/mongodb-mms-automation/mongodb.log" "logs/${prefix}${pod}-mongodb.log" &> /dev/null || true
 
         # note that this file may get empty if the logs have already grew too much - seems it's better to have it explicitly empty then just omit
         kubectl logs -n "${namespace}" "${pod}" | jq -c -r 'select( .logType == "agent-launcher-script") | .contents' 2> /dev/null > "logs/${prefix}${pod}-launcher.log"
-    else
-        # for all other pods we want each log per container from kubectl
-        for container in $(kubectl get pods -n "${namespace}" "${pod}" -o jsonpath='{.spec.containers[*].name}'); do
-            echo "Writing log file for pod ${pod} - container ${container} to logs/${pod}-${container}.log"
-            kubectl logs -n "${namespace}" "${pod}" -c "${container}" > "logs/${pod}-${container}.log"
+    fi
 
-            # Check if the container has restarted by examining its restart count
-            restartCount=$(kubectl get pod -n "${namespace}" "${pod}" -o jsonpath="{.status.containerStatuses[?(@.name=='${container}')].restartCount}")
+    for container in $(kubectl get pods -n "${namespace}" "${pod}" -o jsonpath='{.spec.containers[*].name}'); do
+        echo "Writing log file for pod ${pod} - container ${container} to logs/${pod}-${container}.log"
+        kubectl logs -n "${namespace}" "${pod}" -c "${container}" > "logs/${pod}-${container}.log"
 
-            if [ "${restartCount}" -gt 0 ]; then
-                echo "Writing log file for restarted ${pod} - container ${container} to logs/${pod}-${container}-previous.log"
-                kubectl logs --previous -n "${namespace}" "${pod}" -c "${container}" > "logs/${pod}-${container}-previous.log" || true
-            fi
+        # Check if the container has restarted by examining its restart count
+        restartCount=$(kubectl get pod -n "${namespace}" "${pod}" -o jsonpath="{.status.containerStatuses[?(@.name=='${container}')].restartCount}")
+
+        if [ "${restartCount}" -gt 0 ]; then
+            echo "Writing log file for restarted ${pod} - container ${container} to logs/${pod}-${container}-previous.log"
+            kubectl logs --previous -n "${namespace}" "${pod}" -c "${container}" > "logs/${pod}-${container}-previous.log" || true
+        fi
+
+    done
 
-        done
-    fi
 
     if kubectl exec "${pod}" -n "${namespace}" -- ls /var/log/mongodb-mms-automation/automation-agent-stderr.log &>/dev/null; then
         kubectl cp "${namespace}/${pod}:/var/log/mongodb-mms-automation/automation-agent-stderr.log" "logs/${prefix}${pod}-agent-stderr.log" &> /dev/null