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Commits on Jul 16, 2015
  1. remov get_raw_sequences and fix rubygem

    Monica Dragan
    Monica Dragan committed Jul 16, 2015
Commits on Jul 13, 2015
  1. Merge remote-tracking branch 'origin/event_delegation'

    yeban committed Jul 13, 2015
    * origin/event_delegation:
      attach handler to document
      use event delegation for plot_btn
      use event delegation
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  2. In remotedb warning, '... forfaster analysis' => '... for faster anal…

    yeban committed Jul 13, 2015
    …ysis'.
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Commits on Jul 12, 2015
  1. attach handler to document

    IsmailM committed Jul 12, 2015
  2. Do not track doc folders.

    yeban committed Jul 12, 2015
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  3. Slightly rework Rakefile.

    yeban committed Jul 12, 2015
    'build' now depends on 'test' and only builds the gem, doesn't install it.
    Dependency on 'test' means gem won't be built if tests don't pass. Additionally,
    'default' now calls out to both 'build' (which in turn calls out to 'test') and
    'doc' so that running rake equals to a "complete build".
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  4. Minor refactoring of how -b CLI switch is parsed.

    yeban committed Jul 12, 2015
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  5. Merge remote-tracking branch 'origin/alpha'

    yeban committed Jul 12, 2015
    * origin/alpha:
      remove option to run BLAST separately for each sequence
      update the dependencies of the individual files
      make the command method public
      making the binaries argument an array
    
    Conflicts:
      lib/genevalidator.rb
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  6. use event delegation

    IsmailM committed Jul 12, 2015
  7. Re-order requires in lib/genevalidator.rb as stdlib, gems, our.

    yeban committed Jul 12, 2015
    This fixes the issue in the gem build where arg_validation.rb would complain it
    couldn't find the constant Forwardable. bundler exec bin/genevalidator probably
    eagerly loads dependencies so the issue was never manifested during development.
    
    Ideally each file should require the libraries it depends on and follow the
    above convention of ordering the requires.
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  8. Fix Show/Hide All Charts button regression.

    yeban committed Jul 12, 2015
    Additionally, check whether to Show All Charts based on number of '.plot_btn'.
    This means only the rows for which plot can be rendered is counted.
    
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
  9. Remove a stray log line from stdout (see 5a692bf).

    yeban committed Jul 12, 2015
    Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Commits on Jul 11, 2015
  1. Merge pull request wurmlab#73 from wurmlab/alpha

    IsmailM committed Jul 11, 2015
    Alpha
Commits on Jul 9, 2015
  1. ensuring stdout and stderr: stdout: only the tab-delimited table. std…

    yannickwurm committed Jul 9, 2015
    …err: everything else
    
    Signed-off-by: Yannick Wurm <y.wurm@qmul.ac.uk>
Commits on Jun 22, 2015
  1. align variables

    IsmailM committed Jun 22, 2015
  2. get sequence from remote if hit sequence can not be taken from the pr…

    IsmailM committed Jun 22, 2015
    …ovided BLAST output file
Commits on Jun 18, 2015
  1. update README

    IsmailM committed Jun 18, 2015
Commits on Jun 17, 2015
  1. fix test_validations

    IsmailM committed Jun 17, 2015
  2. Update README

    IsmailM committed Jun 17, 2015
  3. Add Json to GV results option

    IsmailM committed Jun 17, 2015
  4. tidy up lib/genevalidator.rb

    IsmailM committed Jun 17, 2015
  5. tidy up bin file

    IsmailM committed Jun 17, 2015
Commits on Jun 15, 2015