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C. elegans worm movement, including locomotion and foraging, with Morphognosis learning and control.
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C. elegans worm movement, including locomotion and foraging, with Morphognosis learning and control. Setup: 1. Clone or download the project. 2. Import into Eclipse. 3. Build the wormsim_jni library in the jni directory. 4. Run .sh or .bat commands in the work directory Notes on using H2O (https://www.h2o.ai) model: 1. Learn metamorphs using wormsim driver. 2. Use worm dashboard to export head and body training csv files. 3. Train wormworx_head_model using H2O. 4. Export h2o-genmodel.jar and wormworx_head_model.java. 5. Rename h2o-genmodel.jar to h2o-genmodel-head.jar. 6. Repeat 3-5 for body model. 7. Copy jar and java files to work directory. 8. Build. 9. Run. 10. Select metamorphH2ONN driver on worm dashboard. References: Boyle, Berri and Cohen, "Gait modulation in C. elegans: an integrated neuromechanical model" http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00010/abstract https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation.git Eduardo J. Izquierdo and Randall D. Beer, "An Integrated Neuromechanical Model of Steering in C. elegans", ECAL15 Portegys, T., "Morphognosis: the shape of knowledge in space and time" http://ceur-ws.org/Vol-1964/CS2.pdf https://github.com/portegys/Morphognosis