From 2f5e07ed0aaf053631c9654f3ad3680c8b72f606 Mon Sep 17 00:00:00 2001 From: Matt Johnson Date: Mon, 8 May 2017 22:34:14 -0500 Subject: [PATCH] Update changelog --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 912c5cf..5554bed 100644 --- a/README.md +++ b/README.md @@ -94,7 +94,7 @@ For a full description of HybPiper output, [see the wiki](https://github.com/mos ----- # Changelog -**1.2** *March, 2017* +**1.2** *May, 2017* * Features @@ -103,6 +103,7 @@ For a full description of HybPiper output, [see the wiki](https://github.com/mos - Added `--target` flag. Adds the ability to choose which of the reference sequences is used for each gene. If `--target` is a file (tab-delimited file with one gene and one target name per line), HybPiper will use that. Otherwise `--target` can be the name of one reference. HybPiper will only use targets with the specified name in the Alignment/Exon Extraction phase. All other targets for that locus will only be used in the Mapping/Read Sorting phase. - Added `--timeout` flag, which uses GNU Parallel to kill processes (i.e. Spades or Exonerate) if they take X percent longer than average. Use if there are a lot of stuck jobs (`--timeout 1000`) + - Python 3 compatibility * Bug Fixes