Fixes name truncation for chimera.vsearch template!=self

mothur · 4817cec4ed7f0e7a727da256adf3079390f46989 · mothur-westcott committed Feb 10, 2017 · Feb 10, 2017 · 4817cec
1 parent bfeef34
commit 4817cec4ed7f0e7a727da256adf3079390f46989
Unified Split

Showing with 4 additions and 2 deletions.

+4 −2 source/commands/chimeravsearchcommand.cpp
diff --git a/source/commands/chimeravsearchcommand.cpp b/source/commands/chimeravsearchcommand.cpp
@@ -1390,8 +1390,10 @@ int ChimeraVsearchCommand::driver(string outputFName, string filename, string ac
             
             string name = seq.getName();
             
-            name = name.substr(0, name.length()-1); //rip off last ;
-            name = name.substr(0, name.find_last_of(';'));
+            if (templatefile == "self") {
+                name = name.substr(0, name.length()-1); //rip off last ;
+                name = name.substr(0, name.find_last_of(';'));
+            }
             
             out << name << endl; numChimeras++;
         }