Fixes typos

source/commands/clustercommand.cpp

@@ -369,9 +369,6 @@ int ClusterCommand::runVsearchCluster(){
     try {
         //look for vsearch exe
         string path = m->mothurProgramPath;
-        //string tempPath = path;
-        //for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); }
-        //path = path.substr(0, (tempPath.find_last_of('m')));
         
         string vsearchCommand;
 #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
@@ -387,16 +384,16 @@ int ClusterCommand::runVsearchCluster(){
             delete newCommand;
         }
 #else
-        vsearchCommand = path + "vsearch.exe";
+        vsearchCommand = path + "\\vsearch.exe";
 #endif
         
-        //test to make sure uchime exists
+        //test to make sure vsearch exists
         ifstream in;
         vsearchCommand = m->getFullPathName(vsearchCommand);
         int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close();
         if(ableToOpen == 1) {
             m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n");
-            //check to see if uchime is in the path??
+            //check to see if vsearch is in the path??
 
             ifstream in2;
             string uLocation = "";

source/commands/clustersplitcommand.cpp

@@ -1681,12 +1681,9 @@ bool ClusterSplitCommand::findVsearch(){
         
         if (cutoffNotSet) {  m->mothurOut("\nYou did not set a cutoff, using 0.03.\n"); cutoff = 0.03; }
         
-        //look for uchime exe
+        //look for vsearch exe
         string path = m->mothurProgramPath;
-        //string tempPath = path;
-        //for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); }
-        //path = path.substr(0, (tempPath.find_last_of('m')));
-        
+       
         string vsearchCommand;
 #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
         vsearchCommand = path + "vsearch";	//	format the database, -o option gives us the ability
@@ -1704,13 +1701,13 @@ bool ClusterSplitCommand::findVsearch(){
         vsearchCommand = path + "\\vsearch.exe";
 #endif
         
-        //test to make sure uchime exists
+        //test to make sure vsearch exists
         ifstream in;
         vsearchCommand = m->getFullPathName(vsearchCommand);
         int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close();
         if(ableToOpen == 1) {
             m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n");
-            //check to see if uchime is in the path??
+            //check to see if vsearch is in the path??
             
             ifstream in2;
             string uLocation = "";
@@ -1728,9 +1725,7 @@ bool ClusterSplitCommand::findVsearch(){
         
         vsearchLocation = m->getFullPathName(vsearchLocation);
         
-        if (m->debug) {
-            m->mothurOut("[DEBUG]: vsearch location using " + vsearchLocation + "\n");
-        }
+        if (m->debug) { m->mothurOut("[DEBUG]: vsearch location using " + vsearchLocation + "\n"); }
         
         if (!abort) { return true; }