Fixes while building Windows

source/commands/chimerauchimecommand.h

@@ -203,11 +203,11 @@ static DWORD WINAPI MyUchimeThreadFunction(LPVOID lpParam){
 			string accnos = pDataArray->accnos+pDataArray->groups[i];
             
             if (pDataArray->filename.length() > 257) {
-                m->mothurOut("[ERROR]: " + pDataArray->filename + " filename is " + toString(pDataArray->filename.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); m->control_pressed = true; return 0;
+                pDataArray->m->mothurOut("[ERROR]: " + pDataArray->filename + " filename is " + toString(pDataArray->filename.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); pDataArray->m->control_pressed = true; return 0;
             }else if ((pDataArray->alns.length() > 257) && (pDataArray->chimealns)) {
-                m->mothurOut("[ERROR]: " + pDataArray->alns + " filename is " + toString(pDataArray->alns.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); m->control_pressed = true; return 0;
+                pDataArray->m->mothurOut("[ERROR]: " + pDataArray->alns + " filename is " + toString(pDataArray->alns.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); pDataArray->m->control_pressed = true; return 0;
             }else if (pDataArray->outputFName.length() > 257) {
-                m->mothurOut("[ERROR]: " + pDataArray->outputFName + " filename is " + toString(pDataArray->outputFName.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); m->control_pressed = true; return 0;
+                pDataArray->m->mothurOut("[ERROR]: " + pDataArray->outputFName + " filename is " + toString(pDataArray->outputFName.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); pDataArray->m->control_pressed = true; return 0;
             }
 			
 			vector<char*> cPara;
@@ -553,13 +553,13 @@ static DWORD WINAPI MyUchimeSeqsThreadFunction(LPVOID lpParam){
 		string accnos = pDataArray->accnos;
         
         if (pDataArray->filename.length() > 257) {
-            m->mothurOut("[ERROR]: " + pDataArray->filename + " filename is " + toString(pDataArray->filename.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); m->control_pressed = true; return 0;
+            pDataArray->m->mothurOut("[ERROR]: " + pDataArray->filename + " filename is " + toString(pDataArray->filename.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); pDataArray->m->control_pressed = true; return 0;
         }else if ((pDataArray->alns.length() > 257) && (pDataArray->chimealns)) {
-            m->mothurOut("[ERROR]: " + pDataArray->alns + " filename is " + toString(pDataArray->alns.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); m->control_pressed = true; return 0;
+            pDataArray->m->mothurOut("[ERROR]: " + pDataArray->alns + " filename is " + toString(pDataArray->alns.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct.\n"); pDataArray->m->control_pressed = true; return 0;
         }else if (pDataArray->outputFName.length() > 257) {
-            m->mothurOut("[ERROR]: " + pDataArray->outputFName + " filename is " + toString(pDataArray->outputFName.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); m->control_pressed = true; return 0;
+            pDataArray->m->mothurOut("[ERROR]: " + pDataArray->outputFName + " filename is " + toString(pDataArray->outputFName.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); pDataArray->m->control_pressed = true; return 0;
         }else if (pDataArray->templatefile.length() > 257) {
-            m->mothurOut("[ERROR]: " + pDataArray->templatefile + " filename is " + toString(pDataArray->templatefile.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); m->control_pressed = true; return 0;
+            pDataArray->m->mothurOut("[ERROR]: " + pDataArray->templatefile + " filename is " + toString(pDataArray->templatefile.length()) + " long. The uchime program can't handle files with a full path longer than 257 characters, please correct input file name.\n"); pDataArray->m->control_pressed = true; return 0;
         }
 
 		

source/mothurout.cpp

@@ -4372,7 +4372,7 @@ int MothurOut::getTimeStamp(string filename) {
         
         if(hFile == INVALID_HANDLE_VALUE) {
             mothurOut("[ERROR]: Can't find timestamp for " + filename + "\n"); control_pressed = true;
-            return timestamp;
+            return timeStamp;
         }
             
         FILETIME ftCreate, ftAccess, ftWrite;