Eliminates zero OTUs in biom generated shared files

mothur · 676f36bc0cea9adf1408951451e89f557b77edb8 · mothur-westcott committed Sep 22, 2016 · Sep 22, 2016 · 676f36b
1 parent 088c67c
commit 676f36bc0cea9adf1408951451e89f557b77edb8
Unified Split

Showing with 2 additions and 0 deletions.

+2 −0 source/commands/sharedcommand.cpp
diff --git a/source/commands/sharedcommand.cpp b/source/commands/sharedcommand.cpp
@@ -476,6 +476,8 @@ int SharedCommand::createSharedFromBiom() {
 
             //read data
             vector<SharedRAbundVector*> lookup = readData(matrixFormat, thisLine, matrixElementType, groupNames, otuNames.size());
+            
+            eliminateZeroOTUS(lookup);
 
             m->mothurOutEndLine(); m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine();
             lookup[0]->printHeaders(out);