Fixes mimarks primer issue with oligos file

mothur · 8add48ce45400d851ffdfc34dd20388812f77d8f · mothur-westcott committed Aug 4, 2016 · Aug 4, 2016 · 8add48c
1 parent af26f9b
commit 8add48ce45400d851ffdfc34dd20388812f77d8f
Unified Split

Showing with 1 addition and 1 deletion.

+1 −1 source/commands/getmimarkspackagecommand.cpp
diff --git a/source/commands/getmimarkspackagecommand.cpp b/source/commands/getmimarkspackagecommand.cpp
@@ -589,7 +589,7 @@ set<string> GetMIMarksPackageCommand::createGroupNames(Oligos& oligos) {
             //overwrite global oligos - assume fastq data like make.contigs
             Oligos oligos;
             if ((fileOption == 3) || (fileOption == 5)) { oligos.read(oligosfile, false);  } //like make.contigs
-            else {  oligos.read(oligosfile);  }
+            else {  oligos.read(oligosfile, false);  }
             
             map<int, oligosPair> barcodes = oligos.getPairedBarcodes();
             map<int, oligosPair> primers = oligos.getPairedPrimers();