Fixes typos

mothur · 8f163fab31f639063d3334a8027fbc5bdce51549 · mothur-westcott committed Jan 5, 2017 · Jan 5, 2017 · 8f163fa
1 parent f09c7dc
commit 8f163fab31f639063d3334a8027fbc5bdce51549
Unified Split

Showing with 8 additions and 8 deletions.

+1 −1 source/commands/chimeraperseuscommand.h

+1 −1 source/commands/chimerauchimecommand.cpp

+3 −3 source/commands/clustercommand.cpp

+3 −3 source/commands/clustersplitcommand.cpp
diff --git a/source/commands/chimeraperseuscommand.h b/source/commands/chimeraperseuscommand.h
@@ -397,7 +397,7 @@ static DWORD WINAPI MyPerseusThreadFunction(LPVOID lpParam){
 		
 	}
 	catch(exception& e) {
-		pDataArray->m->errorOut(e, "ChimeraUchimeCommand", "MyPerseusThreadFunction");
+		pDataArray->m->errorOut(e, "ChimeraPersuesCommand", "MyPerseusThreadFunction");
 		exit(1);
 	}
 } 
diff --git a/source/commands/chimerauchimecommand.cpp b/source/commands/chimerauchimecommand.cpp
@@ -604,7 +604,7 @@ ChimeraUchimeCommand::ChimeraUchimeCommand(string option)  {
         }
 	}
 	catch(exception& e) {
-		m->errorOut(e, "ChimeraSlayerCommand", "ChimeraSlayerCommand");
+		m->errorOut(e, "ChimeraUchimeCommand", "ChimeraUchimeCommand");
 		exit(1);
 	}
 }
diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp
@@ -371,7 +371,7 @@ int ClusterCommand::execute(){
 
 int ClusterCommand::runVsearchCluster(){
     try {
-        //look for uchime exe
+        //look for vsearch exe
         string path = m->argv;
         string tempPath = path;
         for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); }
@@ -394,13 +394,13 @@ int ClusterCommand::runVsearchCluster(){
         vsearchCommand = path + "vsearch.exe";
 #endif
         
-        //test to make sure uchime exists
+        //test to make sure vsearch exists
         ifstream in;
         vsearchCommand = m->getFullPathName(vsearchCommand);
         int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close();
         if(ableToOpen == 1) {
             m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n");
-            //check to see if uchime is in the path??
+            //check to see if vsearch is in the path??
             
             string uLocation = m->findProgramPath("vsearch");
             
diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp
@@ -1685,7 +1685,7 @@ bool ClusterSplitCommand::findVsearch(){
         
         if (cutoffNotSet) {  m->mothurOut("\nYou did not set a cutoff, using 0.03.\n"); cutoff = 0.03; }
         
-        //look for uchime exe
+        //look for vsearch exe
         string path = m->argv;
         string tempPath = path;
         for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); }
@@ -1708,13 +1708,13 @@ bool ClusterSplitCommand::findVsearch(){
         vsearchCommand = path + "vsearch.exe";
 #endif
         
-        //test to make sure uchime exists
+        //test to make sure vsearch exists
         ifstream in;
         vsearchCommand = m->getFullPathName(vsearchCommand);
         int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close();
         if(ableToOpen == 1) {
             m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n");
-            //check to see if uchime is in the path??
+            //check to see if vsearch is in the path??
             
             string uLocation = m->findProgramPath("vsearch");