Adds tax spaces fix to consTax

#265
mothur · a52462dd832ba276a67079552c7c90f6aed75e09 · mothur-westcott committed Sep 14, 2016 · Sep 14, 2016 · a52462d
1 parent ee7be1e
commit a52462dd832ba276a67079552c7c90f6aed75e09
Unified Split

Showing with 6 additions and 3 deletions.

+2 −1 source/commands/createdatabasecommand.cpp

+2 −1 source/commands/getotulabelscommand.cpp

+2 −1 source/commands/removeotulabelscommand.cpp
diff --git a/source/commands/createdatabasecommand.cpp b/source/commands/createdatabasecommand.cpp
@@ -539,7 +539,8 @@ vector<int> CreateDatabaseCommand::readTax(vector<string>& taxonomies, vector<st
             string otu = ""; string tax = "unknown";
             int size = 0;
             
-            in >> otu >> size >> tax; m->gobble(in);
+            in >> otu >> size; m->gobble(in);
+            tax = m->getline(in); m->gobble(in);
             
             sizes.push_back(size);
             taxonomies.push_back(tax);
diff --git a/source/commands/getotulabelscommand.cpp b/source/commands/getotulabelscommand.cpp
@@ -305,7 +305,8 @@ int GetOtuLabelsCommand::readClassifyOtu(){
             string otu = ""; string tax = "unknown";
             int size = 0;
             
-            in >> otu >> size >> tax; m->gobble(in);
+            in >> otu >> size; m->gobble(in);
+            tax = m->getline(in); m->gobble(in);
             
             if (m->debug) { m->mothurOut("Otu=" + otu + ", size=" + toString(size) + ", tax=" + tax + "\n"); }
             
diff --git a/source/commands/removeotulabelscommand.cpp b/source/commands/removeotulabelscommand.cpp
@@ -306,7 +306,8 @@ int RemoveOtuLabelsCommand::readClassifyOtu(){
             string otu = ""; string tax = "unknown";
             int size = 0;
             
-            in >> otu >> size >> tax; m->gobble(in);
+            in >> otu >> size; m->gobble(in);
+            tax = m->getline(in); m->gobble(in);
             
             if (m->debug) { m->mothurOut("[DEBUG]: " + otu + toString(size) + tax + "\n"); }