Forces abort for Windows vsearch method

mothur · a9fa52e630fa4b71eb9b2c15c5e98290c769a6e7 · mothur-westcott committed Apr 5, 2016 · Apr 5, 2016 · a9fa52e
1 parent 892dec0
commit a9fa52e630fa4b71eb9b2c15c5e98290c769a6e7
Unified Split

Showing with 8 additions and 1 deletion.

+4 −1 source/commands/clustercommand.cpp

+4 −0 source/commands/clustersplitcommand.cpp
diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp
@@ -279,7 +279,10 @@ ClusterCommand::ClusterCommand(string option)  {
             if ((method == "agc") || (method == "dgc")) {
                 if (fastafile == "") { m->mothurOut("[ERROR]: You must provide a fasta file when using the agc or dgc clustering methods, aborting\n."); abort = true;}
             }
-            
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
+#else
+            if ((method == "agc") || (method == "dgc")) { m->mothurOut("[ERROR]: The agc and dgc clustering methods are not available for Windows, aborting\n."); abort = true; }
+#endif
 			showabund = validParameter.validFile(parameters, "showabund", false);
 			if (showabund == "not found") { showabund = "T"; }
 
diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp
@@ -364,6 +364,10 @@ ClusterSplitCommand::ClusterSplitCommand(string option)  {
                 if (fastafile == "") { m->mothurOut("[ERROR]: You must provide a fasta file when using the agc or dgc clustering methods, aborting\n."); abort = true;}
                 if (classic) { m->mothurOut("[ERROR]: You cannot use cluster.classic with the agc or dgc clustering methods, aborting\n."); abort = true; }
             }
+            #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
+            #else
+            if ((method == "agc") || (method == "dgc")) { m->mothurOut("[ERROR]: The agc and dgc clustering methods are not available for Windows, aborting\n."); abort = true; }
+            #endif
             
 			if ((splitmethod == "distance") || (splitmethod == "classify") || (splitmethod == "fasta")) { }
 			else { m->mothurOut("[ERROR]: " + splitmethod + " is not a valid splitting method.  Valid splitting algorithms are distance, classify or fasta."); m->mothurOutEndLine(); abort = true; }