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Code Cleanup #208

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mothur-westcott opened this Issue Feb 8, 2016 · 0 comments

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  Version 1.38.0
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@mothur-westcott
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mothur-westcott commented Feb 8, 2016

  1. The save option. This includes the clear.memory command. We implemented this to store reference files in memory. This was added when we added the classify.seqs command as an experiment with speed. The removal would streamline and simplify code.
  2. Hcluster. We don't recommend it, let's remove it.
  3. Load.logfile. Not used and it's buggy. Let's modify set.current and get.current to output and input files.
  4. pds.pipeline - improve or toss. Maybe small sections of MiSeq_SOP and 454_SOP??

@mothur-westcott mothur-westcott added the Enhancement label Feb 8, 2016

@mothur-westcott mothur-westcott added this to the Version 1.38.0 milestone Feb 8, 2016

@mothur-westcott mothur-westcott added a commit that referenced this issue Apr 12, 2016

@mothur-westcott mothur-westcott Removes cluster 
Code Cleanup

#208
 2268ffd

@mothur-westcott mothur-westcott added a commit that referenced this issue Apr 12, 2016

@mothur-westcott mothur-westcott Removed pipeline.pds command 
Code Cleanup

#208
 09e88b8

@mothur-westcott mothur-westcott added a commit that referenced this issue Apr 12, 2016

@mothur-westcott mothur-westcott Removes save option and clear.memory command 
Code Cleanup

#208
 b4ac1dc

@mothur-westcott mothur-westcott closed this Apr 12, 2016

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