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pre.cluster speed and memory #220

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pschloss opened this Issue Apr 4, 2016 · 1 comment

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  Version 1.39.0
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@pschloss @mothur-westcott
@pschloss
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pschloss commented Apr 4, 2016

is there a way to improve the performance of pre.cluster?

@pschloss pschloss modified the milestone: Version 1.38.0 Apr 14, 2016

@mothur-westcott mothur-westcott added this to the Version 1.39.0 milestone Aug 4, 2016

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 26, 2016

@mothur-westcott mothur-westcott Removes alphasort in precluster 
#220
 2cd73cb

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 26, 2016

@mothur-westcott mothur-westcott Uses mothurOut readNames 
#220
 c2295de

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 26, 2016

@mothur-westcott mothur-westcott Adds filter to aligned method pre.cluster 
#220
 78d4a1c

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 26, 2016

@mothur-westcott mothur-westcott Adds filter to improve time in pre.cluster 
#220
 b33b1a4

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 26, 2016

@mothur-westcott mothur-westcott Improves speed in pre.cluster 
#220
 21e7117
@mothur-westcott
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mothur-westcott commented Sep 26, 2016

Improves speed with commit 56f379f

@mothur-westcott mothur-westcott closed this Sep 26, 2016

@mothur-westcott mothur-westcott added a commit that referenced this issue Oct 4, 2016

@mothur-westcott mothur-westcott Adds group selection to countParser 
#220
 989ed99

@mothur-westcott mothur-westcott added a commit that referenced this issue Oct 4, 2016

@mothur-westcott mothur-westcott Adds selectedGroups to sequenceParser class 
#220
 ef289e2

@mothur-westcott mothur-westcott added a commit that referenced this issue Oct 4, 2016

@mothur-westcott mothur-westcott Adds subsetGroups to Windows pre cluster 
#220
 0a2af8a

@mothur-westcott mothur-westcott added a commit that referenced this issue Oct 6, 2016

@mothur-westcott mothur-westcott Fixes groupIndex for selectedGroups option 
Pre.cluster

#220
 4d8056d
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