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Pcr.seqs - allow for forward and reverse diffs #244

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mothur-westcott opened this Issue Jun 6, 2016 · 1 comment

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mothur-westcott commented Jun 6, 2016

"Is is possible to set the number of pdiffs separately for the forward and reverse primers? I believe the current method is for the total number of pdiffs? so setting pdiffs = 3 means I'll scrap a sequence with 2 mismatches to both the forward and reverse primer;

fpdiffs=2(match) rpdiffs=2(match)

but setting pdiffs = 6, means that I can get some pass that I do not want to

fpdiffs=1(match) rpdiffs=5(noMatch)

Any reasons as to why this is not good would be appreciated.

Thanks"

@mothur-westcott mothur-westcott added this to the Version 1.38.0 milestone Jun 6, 2016

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mothur-westcott commented Jul 14, 2016

Completed with commit 2e89f31

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