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Allow for spaces in taxonomy #265

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mothur-westcott opened this Issue Aug 11, 2016 · 2 comments

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Command:Classify.otu Command:Classify.seqs Command:Summary.tax
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  Version 1.39.0
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mothur-westcott commented Aug 11, 2016

D_4__env.OPS 17 should be able to be read. May need to be internally stored as D_4__env.OPS_17??

Look at adding unclassified to see if _ is necessary there.

@mothur-westcott mothur-westcott added Command:Classify.seqs Command:Classify.otu Command:Summary.tax labels Aug 11, 2016

@mothur-westcott mothur-westcott added this to the Version 1.39.0 milestone Aug 11, 2016

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mothur-westcott commented Aug 16, 2016

WIP commit 5a9d908

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds common functions to tax equalizer 
#265
 72ec06e

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds common functions to phylotype 
#265
 c7179b4

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax spaced read to sort.seqs 
#265
 9ead811

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax spaces to screen.seqs 
#265
 b30ae5e

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax space to pcr.seqs 
#265
 14b21d3

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax space to sub.sample 
#265
 3caf426

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax space to list/get/remove.seqs 
#265
 0755b85

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax space to get/remove.groups 
#265
 1dba3f4

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 24, 2016

@mothur-westcott mothur-westcott Adds tax spaces to get/remove.lineage 
#265
 fadc872

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 25, 2016

@mothur-westcott mothur-westcott Adds tax spaces to classify.otu 
#265
 8d8485f

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 25, 2016

@mothur-westcott mothur-westcott Adds tax spaces to common cons tax read 
#265
 189fc44

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 25, 2016

@mothur-westcott mothur-westcott Adds tax spaces to merge.taxsummary 
#265
 8fe1e55

@mothur-westcott mothur-westcott added a commit that referenced this issue Aug 29, 2016

@mothur-westcott mothur-westcott Adds tax spaces to make.biom 
#265
 395673a

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 7, 2016

@mothur-westcott mothur-westcott WIP adding tests 
#265
 5e7ff32

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 7, 2016

@mothur-westcott mothur-westcott Adds testing units for phylotree 
#265
 19caf05
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mothur-westcott commented Sep 12, 2016

Completed with commit a23ea7d

@mothur-westcott mothur-westcott closed this Sep 12, 2016

@mothur-westcott mothur-westcott added a commit that referenced this issue Sep 15, 2016

@mothur-westcott mothur-westcott Adds tax spaces fix to consTax 
#265
 a52462d
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