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summary.shared failing with double free #347

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Takadonet opened this issue Jun 27, 2017 · 1 comment

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commented Jun 27, 2017

Getting the following error when using this specific dataset.

*** Error in `mothur': double free or corruption (!prev): 0x0000000002421050 ***
....

dataset: https://raw.githubusercontent.com/galaxyproject/tools-iuc/master/tools/mothur/test-data/amazon.an.shared

summary.shared( shared=otu.dat, calc=sharedsobs-sharedchao-sharedace-jclass-jest-sorclass-sorest-jabund-sorabund-thetan-thetayc, all=false, distance=false, subsample=10, iters=42, output=lt, processors=1)

It will not with any value for calc parameter. Cheers

Takadonet added a commit to shiltemann/tools-iuc that referenced this issue Jun 27, 2017

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commented Jun 27, 2017

Thanks for reporting this issue. We are working on a fix.

@mothur-westcott mothur-westcott added this to the Version 1.40.0 milestone Jun 27, 2017

mothur-westcott added a commit that referenced this issue Jul 27, 2017

Creates SharedRabund class
SharedRabund allows for 0 otus in a sample, rabunds do not. SharedRabund also know their group.

#347 #240

mothur-westcott added a commit that referenced this issue Jul 27, 2017

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mothur-westcott added a commit that referenced this issue Aug 7, 2017

shiltemann added a commit to shiltemann/tools-iuc that referenced this issue Oct 9, 2017

shiltemann added a commit to shiltemann/tools-iuc that referenced this issue Feb 7, 2018

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