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Allow for () characters in taxonomy that don't contain numbers #350
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mothur-westcott
added this to the
Back Burner
milestone
Jul 6, 2017
mothur-westcott
added the
Command:Classify.seqs
label
Jul 20, 2017
mothur-westcott
modified the milestone: Version 1.41.0, Back Burner, Version 1.40.0
Aug 7, 2017
mothur-westcott
closed this
Aug 7, 2017
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mothur-westcott commentedJul 6, 2017
The taxonomy file contains taxons like:
FR682493.1.1461 D_0__Archaea;D_1__Marine Hydrothermal Vent Group(MHVG);D_2__uncultured archaeon;D_3__uncultured archaeon;D_4__uncultured archaeon;D_5__uncultured archaeon;D_6__uncultured archaeon;
Mothur expects confidence scores to be in-between the () characters. When it tries to convert MHVG to a number it crashes. You can fix this by changing the () characters to || characters.
FR682493.1.1461 D_0__Archaea;D_1__Marine Hydrothermal Vent Group|MHVG|;D_2__uncultured archaeon;D_3__uncultured archaeon;D_4__uncultured archaeon;D_5__uncultured archaeon;D_6__uncultured archaeon;