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Allow for () characters in taxonomy that don't contain numbers #350

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mothur-westcott opened this issue Jul 6, 2017 · 0 comments

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@mothur-westcott
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commented Jul 6, 2017

The taxonomy file contains taxons like:

FR682493.1.1461 D_0__Archaea;D_1__Marine Hydrothermal Vent Group(MHVG);D_2__uncultured archaeon;D_3__uncultured archaeon;D_4__uncultured archaeon;D_5__uncultured archaeon;D_6__uncultured archaeon;

Mothur expects confidence scores to be in-between the () characters. When it tries to convert MHVG to a number it crashes. You can fix this by changing the () characters to || characters.

FR682493.1.1461 D_0__Archaea;D_1__Marine Hydrothermal Vent Group|MHVG|;D_2__uncultured archaeon;D_3__uncultured archaeon;D_4__uncultured archaeon;D_5__uncultured archaeon;D_6__uncultured archaeon;

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