/mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
  1. C++ 99.4%
  2. Other 0.6%
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Mothur.xcodeproj
.DS_Store
Mothur.1
ace.cpp
ace.h
averagelinkage.cpp
bootstrap.cpp
bootstrap.h
calculator.cpp
calculator.h
chao1.cpp
chao1.h
cluster.cpp
cluster.hpp
clustercommand.cpp
clustercommand.h
collect.cpp
collect.h
collectcommand.cpp
collectcommand.h
collectdisplay.h
collectorscurvedata.h
collectsharedcommand.cpp
collectsharedcommand.h
command.hpp
commandfactory.cpp
commandfactory.hpp
commandoptionparser.cpp
commandoptionparser.hpp
completelinkage.cpp
database.cpp
database.hpp
datavector.hpp
display.h
engine.cpp
engine.hpp
errorchecking.cpp
errorchecking.h
fastamap.cpp
fastamap.h
fileoutput.cpp
fileoutput.h
globaldata.cpp
globaldata.hpp
groupmap.cpp
groupmap.h
helpcommand.cpp
helpcommand.h
inputdata.cpp
inputdata.h
jackknife.cpp
jackknife.h
kmer.cpp
kmer.hpp
kmerdb.cpp
kmerdb.hpp
listvector.cpp
listvector.hpp
mothur.cpp
nameassignment.cpp
nameassignment.hpp
nocommand.cpp
nocommand.h
npshannon.cpp
npshannon.h
observable.h
ordervector.cpp
ordervector.hpp
parselistcommand.cpp
parselistcommand.h
progress.cpp
progress.hpp
quitcommand.cpp
quitcommand.h
rabundvector.cpp
rabundvector.hpp
rarecalc.cpp
rarecalc.h
raredisplay.cpp
raredisplay.h
rarefact.cpp
rarefact.h
rarefactcommand.cpp
rarefactcommand.h
rarefactioncurvedata.h
rarefactsharedcommand.cpp
rarefactsharedcommand.h
readdistcolumnfilecommand.h
readdistphylipfilecommand.cpp
readdistphylipfilecommand.h
readlistfilecommand.h
readmatrix.cpp
readmatrix.hpp
readrabundfilecommand.cpp
readsabundfilecommand.cpp
readsabundfilecommand.h
sabundvector.cpp
sabundvector.hpp
sequence.cpp
sequence.hpp
shannon.cpp
shannon.h
shared.cpp
shared.h
sharedace.cpp
sharedace.h
sharedchao1.cpp
sharedchao1.h
sharedcommand.cpp
sharedcommand.h
sharedjabund.cpp
sharedjabund.h
sharedjclass.cpp
sharedjclass.h
sharedjest.cpp
sharedjest.h
sharedordervector.cpp
sharedordervector.h
sharedrabundvector.cpp
sharedrabundvector.h
sharedsabundvector.cpp
sharedsabundvector.h
sharedsobs.cpp
sharedsobs.h
sharedsorabund.cpp
sharedsorabund.h
sharedsorclass.cpp
sharedsorclass.h
sharedsorest.cpp
sharedsorest.h
sharedthetan.cpp
sharedthetan.h
sharedthetayc.cpp
sharedthetayc.h
simpson.cpp
simpson.h
singlelinkage.cpp
sobs.h
sparsematrix.cpp
sparsematrix.hpp
summarycommand.cpp
summarycommand.h
summarydata.h
summarydisplay.h
summarysharedcommand.cpp
summarysharedcommand.h
utilities.hpp
uvest.cpp
uvest.h
validcalculator.cpp
validcalculator.h
validcommands.cpp
validcommands.h
validparameter.cpp
validparameter.h