mothur/mothur

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	calculators
	chimera
	classifier
	clearcut
	commands
	communitytype
	datastructures
	metastats
	randomforest
	read
	svm
	uchime_src
	averagelinkage.cpp
	calcsparcc.cpp
	calcsparcc.h
	cluster.cpp
	cluster.hpp
	clusterclassic.cpp
	clusterclassic.h
	collect.cpp
	collect.h
	collectdisplay.h
	collectorscurvedata.h
	commandfactory.cpp
	commandfactory.hpp
	commandoptionparser.cpp
	commandoptionparser.hpp
	commandparameter.h
	completelinkage.cpp
	consensus.cpp
	consensus.h
	currentfile.h
	display.h
	dlibshuff.cpp
	dlibshuff.h
	endiannessmacros.h
	engine.cpp
	engine.hpp
	fileoutput.cpp
	fileoutput.h
	gotohoverlap.cpp
	gotohoverlap.hpp
	hcluster.cpp
	hcluster.h
	heatmap.cpp
	heatmap.h
	heatmapsim.cpp
	heatmapsim.h
	inputdata.cpp
	inputdata.h
	libshuff.cpp
	libshuff.h
	linearalgebra.cpp
	linearalgebra.h
	makefile
	mothur.cpp
	mothur.h
	mothurout.cpp
	mothurout.h
	myseqdist.cpp
	myseqdist.h
	nast.cpp
	nast.hpp
	nastreport.cpp
	nastreport.hpp
	needlemanoverlap.cpp
	needlemanoverlap.hpp
	noalign.cpp
	noalign.hpp
	observable.h
	optionparser.cpp
	optionparser.h
	overlap.cpp
	overlap.hpp
	progress.cpp
	progress.hpp
	randomnumber.cpp
	randomnumber.h
	rarecalc.cpp
	rarecalc.h
	raredisplay.cpp
	raredisplay.h
	rarefact.cpp
	rarefact.h
	rarefactioncurvedata.h
	refchimeratest.cpp
	refchimeratest.h
	seqnoise.cpp
	seqnoise.h
	sharedutilities.cpp
	sharedutilities.h
	singlelinkage.cpp
	slibshuff.cpp
	slibshuff.h
	subsample.cpp
	subsample.h
	trialSwap2.cpp
	trialswap2.h
	trimoligos.cpp
	trimoligos.h
	validcalculator.cpp
	validcalculator.h
	validparameter.cpp
	validparameter.h
	venn.cpp
	venn.h
	vsearchfileparser.cpp
	vsearchfileparser.h
	weightedlinkage.cpp
	wilcox.cpp
	wilcox.h