/mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
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  2. Other 0.6%
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Mothur.xcodeproj
.DS_Store
Mothur.1
ace.cpp
ace.h
aligncommand.cpp
aligncommand.h
alignment.cpp
alignment.hpp
alignmentcell.cpp
alignmentcell.hpp
averagelinkage.cpp
bellerophon.cpp
bellerophon.h
bergerparker.cpp
bergerparker.h
binsequencecommand.cpp
binsequencecommand.h
blastalign.cpp
blastalign.hpp
blastdb.cpp
blastdb.hpp
boneh.cpp
boneh.h
bootstrap.cpp
bootstrap.h
bootstrapsharedcommand.cpp
bootstrapsharedcommand.h
bstick.cpp
bstick.h
calculator.cpp
calculator.h
ccode.cpp
ccode.h
chao1.cpp
chao1.h
chimera.cpp
chimera.h
chimeracheckrdp.cpp
chimeracheckrdp.h
chimeraseqscommand.cpp
chimeraseqscommand.h
cluster.cpp
cluster.hpp
clustercommand.cpp
clustercommand.h
collect.cpp
collect.h
collectcommand.cpp
collectcommand.h
collectdisplay.h
collectorscurvedata.h
collectsharedcommand.cpp
collectsharedcommand.h
command.hpp
commandfactory.cpp
commandfactory.hpp
commandoptionparser.cpp
commandoptionparser.hpp
completelinkage.cpp
consensuscommand.cpp
consensuscommand.h
coverage.cpp
coverage.h
database.cpp
database.hpp
datavector.hpp
decalc.cpp
decalc.h
deconvolutecommand.cpp
deconvolutecommand.h
display.h
dist.h
distancecommand.cpp
distancecommand.h
distancedb.cpp
distancedb.hpp
dlibshuff.cpp
dlibshuff.h
eachgapdist.h
eachgapignore.h
efron.cpp
efron.h
engine.cpp
engine.hpp
fastamap.cpp
fastamap.h
fileoutput.cpp
fileoutput.h
filters.h
filterseqscommand.cpp
filterseqscommand.h
fullmatrix.cpp
fullmatrix.h
geom.cpp
geom.h
getgroupcommand.cpp
getgroupcommand.h
getlabelcommand.cpp
getlabelcommand.h
getlinecommand.cpp
getlinecommand.h
getoturepcommand.cpp
getoturepcommand.h
getrabundcommand.cpp
getrabundcommand.h
getsabundcommand.cpp
getsabundcommand.h
getseqscommand.cpp
getseqscommand.h
globaldata.cpp
globaldata.hpp
goodscoverage.cpp
goodscoverage.h
gotohoverlap.cpp
gotohoverlap.hpp
groupmap.cpp
groupmap.h
heatmap.cpp
heatmap.h
heatmapcommand.cpp
heatmapcommand.h
heatmapsim.cpp
heatmapsim.h
heatmapsimcommand.cpp
heatmapsimcommand.h
helpcommand.cpp
helpcommand.h
ignoregaps.h
inputdata.cpp
inputdata.h
jackknife.cpp
jackknife.h
kmer.cpp
kmer.hpp
kmerdb.cpp
kmerdb.hpp
libshuff.cpp
libshuff.h
libshuffcommand.cpp
libshuffcommand.h
listseqscommand.cpp
listseqscommand.h
listvector.cpp
listvector.hpp
logsd.cpp
logsd.h
mallard.h
matrixoutputcommand.cpp
matrixoutputcommand.h
mergefilecommand.cpp
mergefilecommand.h
mothur.cpp
mothur.h
nameassignment.cpp
nameassignment.hpp
nast.cpp
nast.hpp
nastreport.cpp
nastreport.hpp
needlemanoverlap.cpp
needlemanoverlap.hpp
noalign.cpp
noalign.hpp
nocommands.cpp
nocommands.h
npshannon.cpp
npshannon.h
nseqs.h
observable.h
onegapdist.h
onegapignore.h
optionparser.cpp
optionparser.h
ordervector.cpp
ordervector.hpp
overlap.cpp
overlap.hpp
parsimony.cpp
parsimony.h
parsimonycommand.cpp
parsimonycommand.h
pintail.cpp
pintail.h
progress.cpp
progress.hpp
qstat.cpp
qstat.h
quitcommand.cpp
quitcommand.h
rabundvector.cpp
rabundvector.hpp
rarecalc.cpp
rarecalc.h
raredisplay.cpp
raredisplay.h
rarefact.cpp
rarefact.h
rarefactcommand.cpp
rarefactcommand.h
rarefactioncurvedata.h
rarefactsharedcommand.cpp
rarefactsharedcommand.h
readcolumn.cpp
readcolumn.h
readdistcommand.cpp
readdistcommand.h
readmatrix.hpp
readotu.cpp
readotu.h
readotucommand.cpp
readotucommand.h
readphylip.cpp
readphylip.h
readtree.cpp
readtree.h
readtreecommand.cpp
readtreecommand.h
removeseqscommand.cpp
removeseqscommand.h
reversecommand.cpp
reversecommand.h
sabundvector.cpp
sabundvector.hpp
screenseqscommand.cpp
screenseqscommand.h
seqsummarycommand.cpp
seqsummarycommand.h
sequence.cpp
sequence.hpp
sequencedb.cpp
sequencedb.h
shannon.cpp
shannon.h
sharedace.cpp
sharedace.h
sharedanderberg.h
sharedanderbergs.cpp
sharedanderbergs.h
sharedbraycurtis.cpp
sharedbraycurtis.h
sharedchao1.cpp
sharedchao1.h
sharedcommand.cpp
sharedcommand.h
sharedjabund.cpp
sharedjabund.h
sharedjackknife.cpp
sharedjackknife.h
sharedjclass.cpp
sharedjclass.h
sharedjest.cpp
sharedjest.h
sharedkstest.cpp
sharedkstest.h
sharedkulczynski.cpp
sharedkulczynski.h
sharedkulczynskicody.cpp
sharedkulczynskicody.h
sharedlennon.cpp
sharedlennon.h
sharedlistvector.cpp
sharedlistvector.h
sharedmarczewski.cpp
sharedmarczewski.h
sharedmorisitahorn.cpp
sharedmorisitahorn.h
sharednseqs.h
sharedochiai.cpp
sharedochiai.h
sharedordervector.cpp
sharedordervector.h
sharedrabundvector.cpp
sharedrabundvector.h
sharedsabundvector.cpp
sharedsabundvector.h
sharedsobs.cpp
sharedsobs.h
sharedsobscollectsummary.cpp
sharedsobscollectsummary.h
sharedsorabund.cpp
sharedsorabund.h
sharedsorclass.cpp
sharedsorclass.h
sharedsorest.cpp
sharedsorest.h
sharedthetan.cpp
sharedthetan.h
sharedthetayc.cpp
sharedthetayc.h
sharedutilities.cpp
sharedutilities.h
shen.cpp
shen.h
simpson.cpp
simpson.h
singlelinkage.cpp
slibshuff.cpp
slibshuff.h
sobs.h
solow.cpp
solow.h
sparsematrix.cpp
sparsematrix.hpp
suffixdb.cpp
suffixdb.hpp
suffixnodes.cpp
suffixnodes.hpp
suffixtree.cpp
suffixtree.hpp
summarycommand.cpp
summarycommand.h
summarydata.h
summarydisplay.h
summarysharedcommand.cpp
summarysharedcommand.h
systemcommand.cpp
systemcommand.h
tree.cpp
tree.h
treecalculator.h
treegroupscommand.cpp
treegroupscommand.h
treemap.cpp
treemap.h
treenode.cpp
treenode.h
trimseqscommand.cpp
trimseqscommand.h
unifracunweightedcommand.cpp
unifracunweightedcommand.h
unifracweightedcommand.cpp
unifracweightedcommand.h
unweighted.cpp
unweighted.h
uvest.cpp
uvest.h
validcalculator.cpp
validcalculator.h
validparameter.cpp
validparameter.h
venn.cpp
venn.h
venncommand.cpp
venncommand.h
weighted.cpp
weighted.h
whittaker.cpp
whittaker.h