Scripts for OceanAdapt website to visualize shifts in marine animal distributions
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data_raw data updates Aug 31, 2017
data_updates updated data zip 2017 Jun 19, 2017
.gitignore remove the docx file and add to git ignore Jun 28, 2016 Update Aug 31, 2017 data download is gone! Jul 12, 2017


Git repository to support documentation and development of Ocean Adapt

  • complete_r_script.R:
    • the master script that analyzes data for OceanAdapt
    • Comments at head of script provide for instructions on how to run it
  • data_updates/:
    • The trawl data, ready to be uploaded to the OceanAdapt website
    • Each file contains (or should eventually contain, once we fix some bugs) a set of zip files. Each zip file is for a particular trawl survey and is in the format that the OceanAdapt website expects upon uploading.
  • data_raw/:
    • The trawl data files, as originally downloaded from each source
    • Each sub-directory is for a trawl survey in a particular region
    • Within each sub-directory, a zip file contains the complete set of trawl data, as updated on that day.
  • metaData/:
    • has EML (Ecological Metadata Language) files to document the surveys and the data files.
    • Example data files are also included.
      • These are not completely raw data files directly from the surveys, but have been combined into a single file per survey.
  • R/:
    • R code to support OceanAdapt.
    • Currently has a scripts to
      • generate the initial metadata for each region
      • facilitate updating the data each year