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update README.md

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valcu committed Mar 14, 2018
1 parent fd2f299 commit 06113b5f65e0178aee90c71d277cc29d3f04d900
Showing with 11 additions and 6 deletions.
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knitr::knit('README.Rmd')
-->
[![Travis-CI Build Status](https://travis-ci.org/valcu/rangeMapper.svg?branch=master)](https://travis-ci.org/valcu/rangeMapper)
[![Coverage Status](https://img.shields.io/codecov/c/github/valcu/rangeMapper/master.svg)](https://codecov.io/github/valcu/rangeMapper?branch=master)
[![Travis-CI Build Status](https://travis-ci.org/mpio-be/rangeMapper.svg?branch=master)](https://travis-ci.org/mpio-be/rangeMapper)
[![Coverage Status](https://img.shields.io/codecov/c/github/mpio-be/rangeMapper/master.svg)](https://codecov.io/github/mpio-be/rangeMapper?branch=master)
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/rangeMapper)](http://cran.r-project.org/package=rangeMapper)
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[_rangeMapper_](http://onlinelibrary.wiley.com/doi/10.1111/j.1466-8238.2011.00739.x/full/) is a framework for the study of macroecological patterns of life-history traits.
@@ -14,12 +16,13 @@ knitr::knit('README.Rmd')
* Datasets (i.e. maps) are retrieved from `sqlite` project files as objects inheriting from `SpatialPixels` or `data.table`. Maps can be plotted directly with `plot()`.
```r
map = rangeMap.fetch(con, c('median_body_mass', 'median_clutch_size'), spatial = FALSE)
plot(map, boundary = wrens_boundary, ncol = 2)
plot(map, boundary = wrens_boundary, ncol = 2 , outlierDetector = function(x) extremevalues::getOutliersI(x)$limit)
```
![](README-1-1.png)
![](README-1-1.png)
* The link between the assemblage level (i.e. the raster cell) and the species level (i.e. the data behind the raster cell) is kept explicit at all stages of the project.
`MAP`s are constructed based on `SQL` aggregate functions or statistical models build in R and can be based on arbitrary subsets defined at both species and assemblage levels.
@@ -33,9 +36,11 @@ rangeMap.save(con, FUN = lmSlope, biotab = "life_history_traits",
BIO_biotab = "Family = 'Troglodytidae'
AND clutch_size is not NULL") )
```
### Installation
```R
devtools::install_github("valcu/rangeMapper") # development.
devtools::install_github("mpio-be/rangeMapper") # development.
install.packages("rangeMapper") # stable.
```

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