Image analysis tools in Matlab working with data in an OMERO server
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Associated Files
ROIs
Segmentation
bacTracker
deleteElementsFrom
interfaces
omeroTestingFunctions
.gitignore
FLIPLaunchpad.m
FLIPMeasure.m
FRAPLaunchpad.m
FRAPMeasure.m
JavaImageToMatlab.m
ROISegmentAndOverlay.m
ROISegmentDistanceAndMask.m
ROISegmentMeasureAndMask.m
TssBAnalysisQueue.m
TssBRunAnalysis.m
YuabExtentAnalysis.m
cellNeighbours.m
cellPropsToXLS.m
cellProximities.m
clickSection.m
copyImageChangingParameters.m
createImage.m
createNewImage.m
createNewImageFromOldPixels.m
createRenderedImage.m
createSpreadsheetFromData.m
cutPatchesFromROI.m
distanceMeasure.m
ellipse.m
ellipseCoords.m
eventTimerAndCrop.m
eventTimerLaunchpad.m
gatewayConnect.m
gatewayDisconnect.m
getAquisitionBleachingConstant.m
getChannelLabelsFromPixels.m
getChannelMinMax.m
getChannelsFromPixels.m
getColourIdx.m
getDatasetIdsFromImageIds.m
getDsExample.m
getImageIdsAndNamesFromDatasetIds.m
getImagesFromDataset.m
getIntensitiesInROI.m
getMyDatasetImages.m
getMyDatasets.m
getPatchFromRectROI.m
getPixIdFromROIFile.m
getPlaneFromImageId.m
getPlaneFromPixelsId.m
getPlaneStackFromImageId.m
getProjectIdsFromDatasetIds.m
getProjectionsFromDataset.m
getROITimePoints.m
getRenderedPlaneFromImageId.m
getStackFromPixels.m
getUserDefaultGroup.m
importIncellFiles.m
intensityMeasureLaunchpad.m
manualCSV.m
max2.m
maxOfType.m
maxProj.m
measureLines.m
measureSpotsInROI.m
min2.m
neighboursWithFoci.m
numberOverlay.m
numerals.mat
omeroJavaForWorkflows.zip
omeroKeepAlive.m
omxReg.m
otsu.m
otsu16.m
parseAffineMatrix.m
pixelCountPerZ.m
readEllipseROIs.m
readLineROIs.m
readROIs.m
saveMaskImage.m
savePanelsToNewDataset.m
selectROIFiles.m
selectROIFilesForDistanceMeasure.m
selectROIFilesForEventTimerAndCrop.m
selectROIFilesForFLIPAnalysis.m
selectROIFilesForFRAPAnalysis.m
selectROIFilesForLineMeasure.m
selectROIFilesForVolumeIntensityMeasure.m
selectROIFilesForZIntensityMeasure.m
setMatrixType.m
setNewImageChannelNames.m
setPlanes.m
showme.m
showmeMesh.m
showmeRaw.m
showmeRawLargeScreen.m
showmeRawLargeScreenZSections.m
showmeRawZSections.m
splitToPanels.m
sumIntensitiesAreasFromDICSeg.m
typecastMatrix.m
updateROIMapFile.m
updateTransform.m
userLoginOmero.m
userLogoutOmero.m
viewPlanesFromRange.m
volumeIntensityMeasure.m
xml2struct.m
zChooser.m
zExtent.m
zIntensityMeasure.m