Description
- Load fasta DNA of virus and host.
- Convert DNA of virus and host to protein sequence.
- Find all Maximal Exact Matches from virus in host protein sequences.
- Get the mapped DNA intervals in virus and host.
- Get the host DNA to be replaced.
- Replace the virus DNA fragement with the host DNA fragement.
- Write the optimized virus sequence to disk.
Run
python main.py virus_dna.fasta host_dna.fasta