master default AddSerInt CTnew Clang_Win32 MoreCalibChanges-merge-take3 MoreCalibChanges MultRealisations ParamRead Tidying add-usa-states-admins calibration-run-script dlaydon/Add_Nigera_PreParamsAndAdminFile dlaydon/AddNigeriaPopDensity dlaydon/AddParamFileRScript dlaydon/AddQuarantinedNotSick dlaydon/AgeAdunitDummy dlaydon/AmendDocumentation dlaydon/CommentCalib dlaydon/CommentMCMC dlaydon/FixVariablePlaceClosure dlaydon/MoreDocumentationToCode dlaydon/OffTriggersInParamFiles dlaydon/OutputIncInfectionByAdminUnitAndAge dlaydon/PartialAttendanceOverTime dlaydon/RelInfSymptomaticToR dlaydon/TidyICDFsReadParams dlaydon/commentcalib2 gh-pages igfoo/common igfoo/cumV igfoo/thailand matt-gretton-dann/CODEOWNERS-igfoo matt-gretton-dann/add-ci-on-pr matt-gretton-dann/airport-loop-issue matt-gretton-dann/clang-format matt-gretton-dann/coding-style matt-gretton-dann/fix-centos-7 matt-gretton-dann/fix-doxygen-build matt-gretton-dann/fix-kernel-init matt-gretton-dann/force_int32_t matt-gretton-dann/full_run_sample.py matt-gretton-dann/further-parallelise-testing matt-gretton-dann/generalise-absenteeism-2 matt-gretton-dann/handle-very-large-geographies matt-gretton-dann/how-to-unit-tests matt-gretton-dann/multi-threaded-tests matt-gretton-dann/one-binary matt-gretton-dann/parameterize-kernel-sizes matt-gretton-dann/readme-disclaimer matt-gretton-dann/refactor-bmps matt-gretton-dann/rework-printing matt-gretton-dann/test-infra-improvements matt-gretton-dann/update-expected-results matt-gretton-dann/visual-studio-integration matt-gretton-dann/wes-codeowner matt-gretton-dann/xmemory matt-gretton-dann/2020601-update-results matt-gretton-dann/20200603-update-tests mcmc_fit merge-Morecalibchanges revert-322-dlaydon/CommentCalib wes/arith_warnings wes/build_md_fix wes/do_case_shadow_j wes/enum_rollup wes/fix_path_run_samples_py wes/fix_vs_build wes/fix_vs_proj_clang wes/header_guards wes/host_closure_threading wes/params_docs wes/warning_cleanup