v1.5.0

• MaximumLength() calculates maximum possible length of characters, including with inapplicable tokens
• Consistency() now returns retention index and rescaled consistency index

v1.4.0

New features

• TaxonInfluence() calculates influence of individual taxa on phylogenetic inference

Search improvements

• Default to use equal weighting during ratchet iterations
• Support null constraints in AdditionTree()

App improvements

• Exclude taxa from search in app
• Allow search to continue when loading a new file with different taxon names into the app

Housekeeping

• Update calls to DescendantEdges() for compatibility with 'TreeTools' 1.10.0

v1.3.2

• Use PlotTools::SpectrumLegend() for continuous scales in app
• Restore auto-termination of .t files

v1.3.1

• PlotCharacter() now returns invisibly
• Fix missing character in Wills et al. (2012) dataset
• Search by character text in GUI
• Call C functions using symbols

v1.3.0

New features

• New function LengthAdded() tests which characters contribute to taxon instability, per Pol & Escapa (2009)
• WhenFirstHit() recovers tree search information from tree names
• New vignette on tree space mapping
• Support phylo trees as constraints

GUI improvements

• Support reading characters from Excel spreadsheets
• Allow retention of sub-optimal trees
• Use K-means++ clustering

v1.2.0

• 'shiny' GUI improvements:

  • Export log of tree search commands
  • Export R scripts to reproduce figures
  • Simplify layout
  • Misc bug fixes

• New function QuartetResolution() evaluates how a quartet is resolved in
  each of a list of trees.

v1.1.2

• Check tree order & rootedness before scoring (#133)
• Improve error handling
• Replace throw with stop in C++
• Remove test of elapsed times, for CRAN compliance

v1.1.1

• GUI allows selection of subset of trees, for easier analysis of Bayesian tree sets
• Miscellaneous fixes and improvements in 'shiny' GUI
• Test suite for 'shiny' GUI
• Update tests for TreeSearch 1.7

v1.1.0

• Improvements to 'shiny' GUI
• Better integration of rogue taxon exploration
• New vignette describing profile parsimony
• MinimumLength() fully supports ambiguous applicability

v1.0.1

• Memory management with invalid input
• Corrections to metadata