AMR (for R)
https://msberends.gitlab.io/AMR to read about this package.Not a developer? Then please visit our website
It contains documentation about all of the included functions and also a comprehensive tutorial about how to conduct AMR analysis.
NOTE: the original source code is on GitLab (https://gitlab.com/msberends/AMR), so you can report a bug at https://gitlab.com/msberends/AMR/issues. There is a mirror repository on GitHub (https://github.com/msberends/AMR). As the mirror process is automated by GitLab, both repositories always contain the latest changes.
This is the development source of
AMR, a free and open-source R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial properties by using evidence-based methods.
1 Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands - rug.nl umcg.nl
2 Certe Medical Diagnostics & Advice, Groningen, the Netherlands - certe.nl
a Thesis dissertant
b Thesis advisor
How to get this package
All stable versions of this package are published on CRAN, the official R network with a peer-reviewed submission process.
Install from CRAN
(Note: Downloads measured only by cran.rstudio.com, this excludes e.g. the official cran.r-project.org)
Install using RStudio (recommended):
- Click on
- Type in
AMRand press Install
- Click on
Install from Zenodo
This package was also published on Zenodo (stable releases only): https://doi.org/10.5281/zenodo.1305355
Install from GitLab
This is the latest development version. Although it may contain bugfixes and even new functions compared to the latest released version on CRAN, it is also subject to change and may be unstable or behave unexpectedly. Always consider this a beta version. All below 'badges' should be green:
|All functions checked on Linux||GitLab CI [ref 1]|
|All functions checked on Windows||Appveyor Systems Inc. [ref 2]|
|Percentage of syntax lines checked||Codecov LLC [ref 3]|
If so, try it with:
This R package is licensed under the GNU General Public License (GPL) v2.0. In a nutshell, this means that this package:
May be used for commercial purposes
May be used for private purposes
May not be used for patent purposes
May be modified, although:
- Modifications must be released under the same license when distributing the package
- Changes made to the code must be documented
May be distributed, although:
- Source code must be made available when the package is distributed
- A copy of the license and copyright notice must be included with the package.
Comes with a LIMITATION of liability
Comes with NO warranty