Legacy release of MSMBuilder
Python TeX C Cuda Makefile C++ Shell
Latest commit 9ccc0cc Feb 13, 2015 @mpharrigan mpharrigan Merge pull request #457 from msmbuilder/schwancr-patch-1
Update tICA.py
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Extras more changes Jan 4, 2014
Tutorial Merge pull request #394 from rmcgibbo/py3 Mar 27, 2014
docs msmb_theme works now with msmbuilder-legacy. so I removed the local i… Dec 3, 2014
reference Python 3 Mar 18, 2014
scripts Update FindPaths.py Nov 18, 2014
tests got the tests working. I had inadvertantly broken the get_eigenvector… May 7, 2014
tools attempt 1 at getting the docs to push to msmbuilder.org/legacy. I thi… Dec 2, 2014
.gitignore Pydev projects to gitignore Apr 2, 2014
.travis.yml added msmb_theme to .travis.yml Dec 4, 2014
AUTHORS Added CS and RM as authors. Fixed version number. Cleaned up extras Apr 9, 2012
COPYING tjl added in situ project generation Feb 28, 2012
MANIFEST.in Fix manifest Mar 17, 2014
README.md Update README.md Dec 2, 2014
Tutorial.pdf renamed Docs to docs Feb 8, 2013
setup.py Use LooseVersion so setup works with dev version of mdtraj Sep 11, 2014


MSMBuilder: Extensible Software for Building Markov State Models for Biomolecular Conformational Dynamics

Build Status


MSMBuilder 2.0 is now deprecated. New features and bugfixes will not be implemented here. You can find MSMBuilder 3.0 at github.com.


From the command prompt, just type

$ python setup.py install

See the tutorial for more information, including required hardware specs. and dependencies.

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Want to chat with other users and the developers and get help using msmbuilder to analyze your simulations? Sign up for the msmbuilder-user email list at https://mailman.stanford.edu/mailman/listinfo/msmbuilder-user!


Have you found a bug? Do you have an idea for a great new feature, or a gripe about an existing one? Have you written some code that you'd like to contribute to MSMBuilder? Awesome! We'd love to have your contribution!

MSMBuilder is hosted on GitHub. Filing an issue such as a bug report or feature request is easy and will contribute to the future development of MSMBuilder. Contributing code is easy too, just fork the repository and then submit a pull request. A few guidelines on contributing can be found here.