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@MullinsLab

Mullins Lab

Mullins Lab at the University of Washington

Pinned

  1. viroverse Public

    a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows

    Perl 5 1

  2. ISDB Public

    A toolkit for creating databases of viral integration sites in host genomes

    Perl 3 4

  3. An application for analyzing and visualizing DNA methylation in multiple sequence alignments

    JavaScript 1

Repositories

  • highlighter_bot Public

    Automate LANL's HIV mutation-highlighting tool

    Python 0 MIT 0 0 0 Updated Sep 23, 2022
  • Perl 0 0 0 0 Updated Aug 30, 2022
  • JavaScript 0 MIT 0 0 0 Updated Aug 30, 2022
  • HHV8-non-B-DNA Public

    R scripts used in publication: Genomic changes in Kaposi Sarcoma-associated Herpesvirus and their clinical correlates

    R 0 0 0 0 Updated Aug 27, 2022
  • Bio-Cigar Public

    Parse CIGAR strings and translate coordinates to/from reference/query

    Perl 6 3 3 2 Updated Jun 28, 2022
  • viroverse Public

    a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows

    Perl 5 MIT 1 35 5 Updated Jun 25, 2022
  • run_phyml_batch Public

    A toolkit to perform phylogenetic analysis via PhyML_v3.3 and produce the pairwise distances

    Python 0 0 0 0 Updated May 11, 2022
  • ClusteringForPhylobook Public

    This is a repository of R code that clusters sequence data using the GAP procedure and K-mediods clustering. The input is a folder containing fastA files for all the data within a project. The output is a collection of files containing the sequence-to-cluster-ID for each clustering run (e.g. the GAP procedure, and various K's in K-mediod cluster…

    R 0 MIT 0 0 0 Updated Apr 25, 2022
  • Python 0 1 0 0 Updated Apr 16, 2022
  • figtree-enhanced-command-line Public

    FigTree modified with more command line configuration options. For use in pipelines/automation.

    Java 0 0 0 0 Updated Mar 21, 2022

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