Pinned

1. scdefg

   A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.

   Python 1

2. seqdepth

   Code and notebooks for seqdepth project

   Jupyter Notebook

3. wormcells-data

   Gene expression on C. elegans single cells

   HTML

4. pachterlab/poseidon

   poseidon system - open source syringe pumps and microscope for laboratories

   Python 114 31

5. pachterlab/SBP_2019

   Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscript

   Jupyter Notebook 8 1