Skip to content


Repository files navigation


This repository contains a script that converts the images in the Murphy Lab 2D HeLa and 3D HeLa datasets into OME.TIFFs.


Run the script using the command

bash ./

The script will

  1. download the images from the Murphy Lab website
  2. convert the TIFF files into OME.TIFFs using Bioformats


[] Script for 2D HeLa collection


When contributing to this repository, please first discuss the change you wish to make via issue, email, or any other method with the owners of this repository before making a change.

Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.


Copyright (c) 2007-2019 by the Murphy Lab at the Computational Biology Department in Carnegie Mellon University