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Don't call org.eclipse.jgit.lib.Repository's refreshFromDisk()
This method was removed upstream ,  as a part of refactoring.  JGit commit: 01b5392cdbc12ce2e21fd1d1afbd61fdf97e1c38  http://egit.eclipse.org/r/194 Signed-off-by: Mykola Nikishov <email@example.com>
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