Causal precedence relations in the biomedical domain
Getting the corpus (and other resources)
Running the sieve-based architecture (sans-
What you'll need...
Rules used in the deterministic models
Three sets of
Odin-style rules were used for the deterministic models:
conda and Python 3.X
Fork and clone this repository
Create a new
condaenvironment using the
conda env create -f environment.yml
The environment can be updated using the following command:
conda env update -f environment.yml
- Activate the environment:
source activate bionlp
- Test the installation:
python -c "import keras; print('Keras version: ', keras.__version__)"
If you're training on an Ubuntu system with a CUDA card, you can run
gpu_dependencies.sh to set things up.
Running the notebooks