FAQ XCF support
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Part of the MyPaint FAQ.
Can MyPaint save in Gimp XCF format so layers can be preserved when the canvas is ready to be moved to it?
See also the interoperability FAQ entry.
No. MyPaint can't save in Gimp XCF format, but it's possible to save as OpenRaster if you want layers to be preserved.
The current version of GIMP has built-in ORA support; for earlier versions, the plugin at http://registry.gimp.org/node/18435 can be used.