No description, website, or topics provided.
JavaScript HTML CSS Other
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
app
backend
bin
config
docs
public
tests
.bowerrc
.dockerignore
.editorconfig
.ember-cli
.eslintrc
.gitignore
.jshintrc
.travis.yml
.watchmanconfig
Dockerfile
LICENCE
README.md
bower.json
docker-compose.yml_tpl
ember-cli-build.js
package.json
testem.json

README.md

Ceropath

This README outlines the details of collaborating on this Ember application. A short introduction of this app could easily go here.

Prerequisites

You will need the following things properly installed on your computer.

Installation

  • git clone <repository-url> this repository
  • change into the new directory
  • npm install
  • bower install

Running / Development

Pipeline

Le pipeline de CERoPath a besoin des binaires suivant:

Muscle, dnadist et BIONJ sont fournit avec le projet mais en cas de problème de licence il faut aller chercher les binaires sur les sites correspondants.

Le pipeline demande l'installation de deux packages R::

# R
> install.packages('ape')
> install.packages('RSVGTipsDevice')

Puis éditer le fichier bin/nwk2svg.r et remplacer dans la première ligne, le chemin absolute vers le répertoire data/pipeline

Running Tests

  • ember test
  • ember test --server

Building

  • ember build (development)
  • ember build --environment production (production)

Deploying

  • create a file named secret.json with the following structure:

    { "secret": "a-secret-string", "email": "email@tocontact.com" }

  • eureka dockerize

  • `docker-compose up