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Commits on Aug 25, 2011
Joseph committed with Fernando Ortiz
Commits on Mar 25, 2011
…ded Parameters for MEGAN. Minscore now computed as percentage.
Commits on Feb 15, 2011
…mination error. Fixed index-building error. Close #28.
Commits on Feb 8, 2011
Commits on Feb 6, 2011
Commits on Feb 5, 2011
…oining. Fixed Denovo Assembly indexing.
Commits on Feb 1, 2011
…s file deletion on error. Close #45.
…d MEGAN file task error. Fixed timing scope error. Fixed task reporting error.
Commits on Jan 28, 2011
Commits on Jan 27, 2011
Commits on Jan 23, 2011
… Online link repository. Changed double quotes to single quotes when possible for clarity. Beginnings of support for MEGAN 4.0 (soon to exit beta).
Commits on Jan 10, 2011
…ated logging. Closes #3. Logging is not only more robust and correct, but is now linked directly with all shell commands executed. Logging information may be added to reports at some point. Provide useful information about data.
Commits on Dec 31, 2010
Joseph Coco committed
Commits on Dec 21, 2010
Commits on Dec 20, 2010
…by BLAST+ now supported. Removed comparison feature of contig comparison. The MEGAN comparison feature was found to prevent the ability to change LCA parameters, thus FASTA contigs are joined instead.
Commits on Nov 27, 2010
type over rides via commandline.
Commits on Nov 25, 2010
Commits on Nov 24, 2010
Rewrote the logic to determine if the NT database was installed. Changed all find commands to execute locate if it's installed, but if the file is not found by locate or if locate is not installed, find is run. Reserialization of the configuration files was failing, so I added a task which will automatically be executed at the end of each task list instead. Not fully tested.
Commits on Nov 23, 2010
v0.27. Added semi-colons to ends of some of shell commands. Included ability to search system for NT database. Added blastInstall to dependency of ntInstall.