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FASTQ (Sequence Data) and FAST5 (Raw Signal Data)

FASTQ and FAST5 files for the dataset have been split by centre and sample. All runs MinION unless noted.

Centre Run # SampleType Kit Pore Links
Bham Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Bham Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5 (GridION)
JHU Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
JHU Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
JHU Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
JHU Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
JHU Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Notts Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Notts Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Notts Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Notts Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Notts Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
OICR Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
OICR Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
OICR Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
OICR Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
OICR Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UBC Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UBC Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UBC Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UBC Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UBC Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UCSC Run1 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UCSC Run2 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UCSC Run3 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UCSC Run4 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
UCSC Run5 RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5
Bham Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
Bham Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
JHU Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
JHU Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
Notts Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
Notts Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
OICR Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
OICR Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
UBC Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
UBC Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
UCSC Run1 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
UCSC Run2 1D cDNA SQK-PCS108 R9.4 FASTQ fail, FASTQ pass
Bham Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
Bham Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
JHU Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
JHU Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
Notts Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
Notts Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
OICR Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
OICR Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
UBC Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
UBC Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
UCSC Run1 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
UCSC Run2 1D2 cDNA SQK-LSK308 R9.4 1D FASTQ
UCSC Run1 IVT RNA SQK-RNA001 R9.4 FASTQ fail, FASTQ pass, FAST5

Bulk FAST5 (Continuous Data)

The Notts centre acquired continuous data (Bulk FAST5 File) for each of their consortium runs. These files could be visualized using bulkvis.

Centre Run # SampleType Kit Pore Links
Notts Run1 RNA SQK-RNA001 R9.4 Bulk FAST5
Notts Run2 RNA SQK-RNA001 R9.4 Bulk FAST5, Bulk Fast5 rs1
Notts Run3 RNA SQK-RNA001 R9.4 Bulk FAST5
Notts Run4 RNA SQK-RNA001 R9.4 Bulk FAST5
Notts Run5 RNA SQK-RNA001 R9.4 Bulk FAST5
Notts Run1 1D cDNA SQK-PCS108 R9.4 Bulk FAST5
Notts Run2 1D cDNA SQK-PCS108 R9.4 Bulk FAST5
Notts Run1 1D2 cDNA SQK-LSK308 R9.4 Bulk FAST5
Notts Run2 1D2 cDNA SQK-LSK308 R9.4 Bulk FAST5
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