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Oxford Nanopore Technologies

Nanopores for single molecule (DNA/RNA, protein) analysis using the MinION, GridION and PromethION systems


  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 414 52

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 141 17

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 385 72

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 116 13

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 173 28

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 377 116


Showing 10 of 88 repositories