From e327a83a8fe5aed1ab06350820638f4e5912c228 Mon Sep 17 00:00:00 2001 From: Joyjit Daw Date: Mon, 5 Feb 2024 17:01:32 -0500 Subject: [PATCH 1/2] Release checklist for v0.5.3 release 1. Changelog updates 2. README updates 3. Version update --- CHANGELOG.md | 7 +++++++ README.md | 8 ++++---- cmake/DoradoVersion.cmake | 2 +- 3 files changed, 12 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7d12ea33..32833276 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,13 @@ All notable changes to Dorado will be documented in this file. +# [0.5.3] (06 Feb 2024) + +This release of Dorado fixes a bug causing low Poly(A) estimation rates in RNA. + +* 59a083c9d9ee359049fc30ea4ca9ec4aacb84fe7 - Fix RNA Poly(A) tail estimated in the absence of adapter trimming. +* f0f98838156fe45c51a3e39795ee45248e045100 - Clarify `ns` tag in Dorado SAM spec. + # [0.5.2] (18 Jan 2024) This release of Dorado fixes a bug causing malformed CIGAR strings, prevents crashing when calling modifications with duplex, and improves adapter and primer trimming support. diff --git a/README.md b/README.md index c5550f70..2b0360e6 100644 --- a/README.md +++ b/README.md @@ -19,10 +19,10 @@ If you encounter any problems building or running Dorado, please [report an issu ## Installation - - [dorado-0.5.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.2-linux-x64.tar.gz) - - [dorado-0.5.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.2-linux-arm64.tar.gz) - - [dorado-0.5.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.2-osx-arm64.zip) - - [dorado-0.5.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.2-win64.zip) + - [dorado-0.5.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-x64.tar.gz) + - [dorado-0.5.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-arm64.tar.gz) + - [dorado-0.5.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-osx-arm64.zip) + - [dorado-0.5.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-win64.zip) ## Platforms diff --git a/cmake/DoradoVersion.cmake b/cmake/DoradoVersion.cmake index 25384583..38b38de2 100644 --- a/cmake/DoradoVersion.cmake +++ b/cmake/DoradoVersion.cmake @@ -1,6 +1,6 @@ set(DORADO_VERSION_MAJOR 0) set(DORADO_VERSION_MINOR 5) -set(DORADO_VERSION_REV 2) +set(DORADO_VERSION_REV 3) find_package(Git QUIET) if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git") From 69b625a8977645e7c0121f20156e2b0c561241db Mon Sep 17 00:00:00 2001 From: Joyjit Daw Date: Mon, 5 Feb 2024 18:23:54 -0500 Subject: [PATCH 2/2] update hyperlink text to match version --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 2b0360e6..e2c2e837 100644 --- a/README.md +++ b/README.md @@ -19,10 +19,10 @@ If you encounter any problems building or running Dorado, please [report an issu ## Installation - - [dorado-0.5.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-x64.tar.gz) - - [dorado-0.5.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-arm64.tar.gz) - - [dorado-0.5.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-osx-arm64.zip) - - [dorado-0.5.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-win64.zip) + - [dorado-0.5.3-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-x64.tar.gz) + - [dorado-0.5.3-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-linux-arm64.tar.gz) + - [dorado-0.5.3-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-osx-arm64.zip) + - [dorado-0.5.3-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.5.3-win64.zip) ## Platforms