This repository contains additional analysis scripts used in the paper: Beaulaurier et al.: Assembly-free single-molecule nanopore sequencing recovers complete virus genomes from natural microbial communities.
- python>=3.6
- biopython>=1.68
- pandas>=0.22
- tqdm>=4.23.3
- matplotlib>=3.0.0
- numpy>=1.15
- scipy>=1.1.0
- scikit-learn>=0.19.1
- hdbscan>=0.8.20
- umap-learn>=0.3.8
- mummer==3.23
All dependencies are available via conda.