dockflow/config/tcga.yml at master · nanxstats/dockflow · GitHub

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maintainer: "Nan Xiao"
email: "me@nanx.me"
from: "rocker/tidyverse:latest"
pandoc: false

sysdeps:
  - libgsl-dev
  - ghostscript

cran:
  - rmdformats
  - DT
  - circlize
  - c3net
  - pbapply
  - ggplot2
  - ggthemes
  - readr
  - downloader

bioc:
  - TCGAWorkflowData
  - TCGAbiolinks
  - SummarizedExperiment
  - RTCGAToolbox
  - gaia
  - GenomicRanges
  - ComplexHeatmap
  - clusterProfiler
  - minet
  - rGADEM
  - BSgenome.Hsapiens.UCSC.hg19
  - motifStack
  - MotIV
  - ChIPseeker
  - AnnotationHub
  - ELMER
  - EDASeq
  - GO.db
  - DO.db
  - MotifDb
  - biomaRt
  - GenomeInfoDb

remotes:
  - url::https://bioconductor.org/help/workflows/TCGAWorkflow/TCGAWorkflow_0.99.73.tar.gz